Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-APY1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18280 617 / 0 ATAPY2 apyrase 2 (.1.2) AT3G04080 608 / 0 ATAPY1 apyrase 1 (.1) AT1G14240 156 / 2e-42 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G14250 147 / 4e-39 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 140 / 1e-36 GDA1/CD39 nucleoside phosphatase family protein (.1) AT2G02970 137 / 3e-35 GDA1/CD39 nucleoside phosphatase family protein (.1) AT4G19180 86 / 9e-18 GDA1/CD39 nucleoside phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053500 [exp] 796 / 0 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031200 [exp] 460 / 9e-160 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053700 [exp] 300 / 2e-99 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.008G086400 [exp] 145 / 5e-38 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 143 / 2e-37 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 104 / 9e-24 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.015G079900 [exp] 82 / 1e-16 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G195600 [exp] 64 / 1e-10 AT5G21140 325 / 2e-108 embryo defective 1379 (.1) Potri.004G236900 [exp] 64 / 1e-10 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042528 [exp] 656 / 0 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10006546 [exp] 650 / 0 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10003270 [exp] 535 / 0 AT5G18280 558 / 0.0 apyrase 2 (.1.2) Lus10030470 [exp] 133 / 2e-33 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 127 / 1e-31 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10021989 [exp] 95 / 2e-20 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027686 [exp] 85 / 2e-17 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 84 / 3e-17 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 59 / 4e-09 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 59 / 7e-09 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF01150 [poplar] [flax] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Potri.019G031000.2 pacid=42774665 polypeptide=Potri.019G031000.2.p locus=Potri.019G031000 ID=Potri.019G031000.2.v4.1 annot-version=v4.1 ATGAAGCGACCAGGCATGCGAAACGAGCCACTGAGTGACAAGGTCCACAAGTACAGAGGAGTGTTGCTGGTGATTTCGATCCCGATGCTTTTGATCGCTT TTGTGCTGTTGGTGATGCCGAGTCGTGAGGATTATGAATACGGAGGAGGAGTGAGTCGAAAGATGTCGCCGAATCTTGTTAGGGATTCGAGGAGTTATGC GGTTATTTTTGATGCCGGGAGTTCAGGGAGTAGAGTTCATGTTTTTTGTTTTGATCGGAATTTGGATCTTGTTCCTATCGGTAAAGAACTCGAGCTTTTT GTGCAGCTTAAACCAGGTTTGAGTGCTTATGCAAATAACCCGCAAGAAGCAGCCAAATCCCTCGCTTCACTGCTTGATAAAGCTGAAAGCTCTGTGCCTA AAGAGCTCCGACCAAAAACACCAGTCAGAGTTGGGGCTACTGCTGGCTTGAGGGCATTGGGAATGGAAGCATCAGATAGAATTTTGCAAGCGGTTAGGGA TTTCCTGAGAGCTAAAAGCACCCTGAAATCTGAGGCAAACGGGGTCACGGTTTTGGATGGTTCTCAAGAAGGTTCTTATCAGTGGGTGACGATAAACTAC CTTTTAGGAAATTTAGGAAAGAAATATTCAAACACGGTTGGAGTTGTAGATCTTGGCGGTGGATCTGTTCAAATGGCATATGCAATCTCCGAGATGGATG CAGCGAAAGCTCCGAGGATATCTGATGGAGAAGATACATATGTAAAGGAAATGTTTTTGATGGGAACCAAATATTACCTCTATGTTCACAGCTATTTGCA TTATGGTTTATTAGCAGCTCGAGCAGAAATTTTGGATGCTTCAGAGGAGTCTAGCAATCCATGCATCCTGGGTGGTTATGATGGGGTATACAATTATGGA GGGAAAGACCATAAAGCATCAGCTTCTCCATCTGGTTCAAACTTGGACGAGTGCAGGAGGGTAGCTCTTAATGCTCTCAAAGTTAATGAATCGACTTGTA CAAACATGAAATGTACATTTGGAGGAGTATGGAATGGTGGCGGCGGGGATGGACAGAAGAATATGTTTGTTGCATCATTTTTCTTCGACAGAGCTGCTCA GGCTGGTTTTGTTGATTCAACTTTACCAGTTGTCAAAGTTCGACCTGTGGATTTTGAGCATGCTGCAAAGCGTGCTTGTGGAACTAAACTAGAGAATGCT AAATCCATATATCACAGTTTGGATGAGAATGATCTGCCATATATATGCATGGATCTGGTCTATCAGTACACATTGCTTGTAGAGGGATTTGCTATGGATC CATTGCAAGATATGATGTTGGTGAAGAAGGTTCAGTACCGAGATTCCCTTGTGGAAGCTGCATGGCCACTGGGCAGTGCCATAGAGGCTGTGTCATCACC AGCATAA
AA sequence Show only first row Show all	>Potri.019G031000.2 pacid=42774665 polypeptide=Potri.019G031000.2.p locus=Potri.019G031000 ID=Potri.019G031000.2.v4.1 annot-version=v4.1 MKRPGMRNEPLSDKVHKYRGVLLVISIPMLLIAFVLLVMPSREDYEYGGGVSRKMSPNLVRDSRSYAVIFDAGSSGSRVHVFCFDRNLDLVPIGKELELF VQLKPGLSAYANNPQEAAKSLASLLDKAESSVPKELRPKTPVRVGATAGLRALGMEASDRILQAVRDFLRAKSTLKSEANGVTVLDGSQEGSYQWVTINY LLGNLGKKYSNTVGVVDLGGGSVQMAYAISEMDAAKAPRISDGEDTYVKEMFLMGTKYYLYVHSYLHYGLLAARAEILDASEESSNPCILGGYDGVYNYG GKDHKASASPSGSNLDECRRVALNALKVNESTCTNMKCTFGGVWNGGGGDGQKNMFVASFFFDRAAQAGFVDSTLPVVKVRPVDFEHAAKRACGTKLENA KSIYHSLDENDLPYICMDLVYQYTLLVEGFAMDPLQDMMLVKKVQYRDSLVEAAWPLGSAIEAVSSPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.019G031000 [exp]	0	1	Pt-APY1.4
AT1G43580			Sphingomyelin synthetase famil...		Potri.005G193300 [exp]	3.16	0.8848
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G039000 [exp]	3.31	0.9104
AT5G18500			Protein kinase superfamily pro...		Potri.008G214200 [exp]	5.91	0.8606
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G049700 [exp]	6.32	0.8679
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.002G199600 [exp]	7.93	0.8676
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	9.05	0.8973
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.002G149400 [exp]	11.22	0.8429
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.007G121400 [exp]	12.00	0.8895
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	12.00	0.8863
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.014G124200 [exp]	12.68	0.8871

Compare expression of checked genes

Potri.019G031000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.