Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09230 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054300 [exp] 482 / 5e-170 AT1G09230 253 / 3e-79 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019754 [exp] 348 / 4e-117 AT1G09230 476 / 6e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10016372 [exp] 308 / 2e-101 AT1G09230 392 / 1e-132 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.019G031700.2 pacid=42773422 polypeptide=Potri.019G031666.1.p locus=Potri.019G031700 ID=Potri.019G031700.2.v4.1 annot-version=v4.1 ATGTCTGCTTTTCCTTCTCCACAGAATTTAATGAATGCCCAGCTGCAGGATTTTGGGTTTCAAGGCAACGATTTGAAAGCAGAATCAGTAGAACCACAAG TGACTGTTACCCTTTTGATCAAACACCTCCCTGAAGCTATTCCTTTTAAAACTCTTTCAAGGCTTTTCTCTCATTATGGTGCTGTCTCTGTTCGTCCTTG CAATTCTGGAAGATTGAAAAATTGTGCATTTGTTGATTTCAAAAGTGAAAGCTTGGCTTATCAAGCGCATACTCAGTTAAATGGGCTGAGTTTTCTTGGC AAGGTCTTATCGGTGGAGAGAGCTAGTAAGCTAAGTGAGGCTCAACAAGGAAAAGAATCTGTACCACCAACATCTTTGATTGAGGATGCTTCTGTGACTA GAGATGTTGGCGATGGCTCAAAATTCAGGTCCTTTCCTGCTAGTGAACCAATTGCTCCAAGGCTTGGTGTTGACTATCCATTCCCCCCTCATTTGGAGTA TGCTTACCCTCCACCAGATGGAAACATTCTAACCAACATTGTAAATGCTCTTATTGCTGTTCCTCGCTTCTATACACAGGTGTTGCATTTGATGAACAAA ATGAATATTCCAGCTCCATTTAGAATGGCCCTGCCCACTCCACCTCTCCCCCCTGCAGCACTTGTGCCTCCACCACCACCACCACCTCCTCGTATATCTG AAAAGTCTCCATTGGCAGAGCAATCCAGTAGCGAGTCAGAAATGGAGTCTTCAGATGAGGAGTTTGATGATAAAGCCTTGTATGAAGCCTCAGGAGCTGT TAAACCCAGAAGAAAGCGTGTCAAGCGGGAAGCAATTGTAGGACCTGCAGCTGATAAAGACATAGTTCATGAGGCTGTTGGCCTGAAACCTGCCTTCTTG GTCCCAAAAGAAATTCCAGTTATAAAGAAAAAGAATCCTGTGCTGCAGATTAAGATTGCACCAAGAGTAACTCAAAATGAACATAAAGATGATAACATCG CGACAGAATCTGAGGACCCAGACAAAGAGGGTTGCAGAAGAAATAGAGAGTAA
AA sequence Show only first row Show all	>Potri.019G031700.2 pacid=42773422 polypeptide=Potri.019G031666.1.p locus=Potri.019G031700 ID=Potri.019G031700.2.v4.1 annot-version=v4.1 MSAFPSPQNLMNAQLQDFGFQGNDLKAESVEPQVTVTLLIKHLPEAIPFKTLSRLFSHYGAVSVRPCNSGRLKNCAFVDFKSESLAYQAHTQLNGLSFLG KVLSVERASKLSEAQQGKESVPPTSLIEDASVTRDVGDGSKFRSFPASEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNK MNIPAPFRMALPTPPLPPAALVPPPPPPPPRISEKSPLAEQSSSESEMESSDEEFDDKALYEASGAVKPRRKRVKREAIVGPAADKDIVHEAVGLKPAFL VPKEIPVIKKKNPVLQIKIAPRVTQNEHKDDNIATESEDPDKEGCRRNRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	0	1
AT2G43970			RNA-binding protein (.1.2)		Potri.017G007400 [exp]	4.24	0.8226
AT2G36430			Plant protein of unknown funct...		Potri.004G185501 [exp]	5.65	0.8500
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283200 [exp]	6.70	0.8828
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	8.06	0.8332
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	8.12	0.8668
AT5G15270			RNA-binding KH domain-containi...		Potri.004G123400 [exp]	9.00	0.8491
AT5G61820			unknown protein		Potri.012G110300 [exp]	9.16	0.8337
AT1G73930			unknown protein		Potri.015G049900 [exp]	9.64	0.7433
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	9.94	0.8373
AT5G66820			unknown protein		Potri.005G136600 [exp]	11.66	0.7918

Compare expression of checked genes

Potri.019G031700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.