Plant FIBer expression Database

Potri.019G031732 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G031732.1 pacid=42773289 polypeptide=Potri.019G031732.1.p locus=Potri.019G031732 ID=Potri.019G031732.1.v4.1 annot-version=v4.1
ATGCCACGTCAAGCCAAAGACCAGCCACCACACATACTTGCTGCCCAAAATAACAGTCTGACACACATCCGCCAGCCACCAAAAACTAGCAATAACTGCC
ATATCAACCACTGCACACTACCTCAACAACAAACACCGCAACACTTCGTAAACACCTCCTATCCAATAACCATTTGCTTAGGCAACAATAATGAGCCCAG
ACCAAGAGCCTTAATCGCCAACCAACAAAACCCAAGCCCAATAGTAGCCACCCATCAGCCATCGTCCACCACAACAAATCAAGCCGCAACAGCCAATCTA
ATCTTCCCTATAACACCATCAATCTACCATAACCACCGTTCCCATCTAACCACAACCAACAATCACTCTACCCCGATCAGTCCACCAATCATCAACATCG
CAACCACCACAGACTCAATCCAGTGCATCAACCTCCATGCTCGAAGTCCAACCACAGCTAGACAGTCCTCAGCTTCCACACGCTGTTCCTTAGCCATCAG
TTTCATCAAGGCAAGTCATCACGCGTTTTCAATCTCAAGAGTTCCACCGATTTTGGCTAAGAGAGAAATGAAGAAGAAAGGAACAAGTTTTGGCTATTCT
TTACTATTCGTTGTCTTTTACTCTTCTACCAATTTCGCAACTGCCTTTTACTCTTAA
AA sequence
>Potri.019G031732.1 pacid=42773289 polypeptide=Potri.019G031732.1.p locus=Potri.019G031732 ID=Potri.019G031732.1.v4.1 annot-version=v4.1
MPRQAKDQPPHILAAQNNSLTHIRQPPKTSNNCHINHCTLPQQQTPQHFVNTSYPITICLGNNNEPRPRALIANQQNPSPIVATHQPSSTTTNQAATANL
IFPITPSIYHNHRSHLTTTNNHSTPISPPIINIATTTDSIQCINLHARSPTTARQSSASTRCSLAISFIKASHHAFSISRVPPILAKREMKKKGTSFGYS
LLFVVFYSSTNFATAFYS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G031732
[exp]
0 1
Potri.006G023450
[exp]
1.41 0.8770
AT4G32290 Core-2/I-branching beta-1,6-N-... Potri.006G254800
[exp]
1.73 0.8578
AT1G49230 RING/U-box superfamily protein... Potri.019G010500
[exp]
4.00 0.8247
AT1G49310 unknown protein Potri.009G114400
[exp]
6.24 0.8177
AT4G32870 Polyketide cyclase/dehydrase a... Potri.006G237050
[exp]
8.06 0.8355
AT1G63245 CLE14 CLAVATA3/ESR-RELATED 14 (.1) Potri.002G228000
[exp]
8.12 0.7947
AT5G28740 Tetratricopeptide repeat (TPR)... Potri.011G043812
[exp]
10.72 0.7946
AT4G00650 FLA, FRI FLOWERING LOCUS A, FRIGIDA-lik... Potri.015G110066
[exp]
10.95 0.8314
AT1G51450 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRA... Potri.001G256000
[exp]
11.48 0.8211
AT3G20640 bHLH bHLH123 basic helix-loop-helix (bHLH) ... Potri.001G410600
[exp]
11.83 0.8282

Potri.019G031732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.