Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08570 325 / 3e-112 ACHT4 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) AT2G33270 260 / 1e-86 ACHT3 atypical CYS HIS rich thioredoxin 3 (.1) AT5G61440 222 / 6e-72 ACHT5 atypical CYS HIS rich thioredoxin 5 (.1) AT4G29670 150 / 3e-44 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2) AT4G26160 144 / 4e-42 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT3G51030 52 / 2e-08 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT5G16400 50 / 3e-07 TRXF2, ATF2 thioredoxin F2 (.1) AT3G02730 49 / 8e-07 TRXF1, ATF1 thioredoxin F-type 1 (.1) AT1G69880 47 / 2e-06 ATH8 thioredoxin H-type 8 (.1) AT5G39950 45 / 6e-06 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061200 [exp] 454 / 2e-162 AT1G08570 295 / 4e-100 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.006G150700 [exp] 164 / 1e-49 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.018G066500 [exp] 162 / 1e-48 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.007G018000 [exp] 55 / 1e-09 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.005G232700 [exp] 52 / 1e-08 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.019G054800 [exp] 52 / 7e-08 AT3G02730 204 / 1e-67 thioredoxin F-type 1 (.1) Potri.002G066800 [exp] 50 / 2e-07 AT1G76760 192 / 2e-63 thioredoxin Y1 (.1) Potri.017G076700 [exp] 45 / 5e-06 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Potri.005G193400 [exp] 44 / 2e-05 AT1G76760 198 / 2e-65 thioredoxin Y1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020254 [exp] 332 / 1e-114 AT1G08570 318 / 1e-109 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10002640 [exp] 329 / 2e-113 AT1G08570 320 / 2e-110 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10026878 [exp] 308 / 2e-105 AT1G08570 332 / 7e-115 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10003437 [exp] 304 / 1e-103 AT1G08570 324 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10019087 [exp] 216 / 1e-69 AT1G08570 223 / 4e-73 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10015711 [exp] 215 / 6e-69 AT1G08570 220 / 2e-71 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10007994 [exp] 160 / 8e-46 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10040554 [exp] 156 / 2e-44 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10041799 [exp] 54 / 6e-09 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10028349 [exp] 53 / 1e-08 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.019G031900.1 pacid=42773874 polypeptide=Potri.019G031900.1.p locus=Potri.019G031900 ID=Potri.019G031900.1.v4.1 annot-version=v4.1 ATGACAGAGGTTTTGAGCAAGACAAATCTATTTTCTTCTGGTAATTATCAAACCCGGCAACACAATACTATTTCTGTGTTTACAAAGAGTTGCAGGCTTA AAGGGTTTCCTTCGAGGGTCAAACCACAGGGTTTGAGATCTCAAATTTCAAGATCTTCGTCTTGTAGTGATTTTTATGGCAAGAGGGTTGTTGTTCATGG AAATCAAAGCAAACCCAGAAGAGGGTATCTTCCTCAAGCTTCGGTTGTGGCTCTGACTGGCCTTAAACTTAAATATGCTAAAAAATGGTGGGAGAAAGGT CTGCAACCCAACATGAGAGAAGTAACTTCTGCGCAAGATCTTGTGGATTCCCTAATGAATGCTGGGGACCAACTTGTTGTAGTTGATTTCTTTTCCCCTG GATGTGGTGGCTGCAAAGCTCTCCATCCCAAGATATGTCAATTGGCAGAGATGAATCCAGATGTACAATTTCTTCAAGTTAATTACGAGGAGCACAAATC CATGTGTTATAGCCTCAATGTCCATGTGTTACCATTCTTCCGGTTTTATAGAGGAGCTCATGGCCGGTTATGCAGCTTTAGCTGTACTAATGCCACGATC AAGAAATTCAAAGATGCATTGGCCAAGCACACACCAGAGCGATGTAGCCTTGGGCCAACAAAAGGGTTGGAGGAAAAAGAACTTGTTGCATTGGCAGCTA ACAAAGATCTCTCCTTCACGTATACACCCAAACCAGTTCAACCTGCTCCTGTCCCTGCAGAGGAAGAGGTAGCACCAACAGCAGGCCCATCTCATTCAGA CCGAGGTCTACCACTTCCTCTTCCTATAACAAGCTCGAAGTCTGCTCAAGACTCAGAGGAGAAAACCCTTGTGAGTTCTGGGAGATGA
AA sequence Show only first row Show all	>Potri.019G031900.1 pacid=42773874 polypeptide=Potri.019G031900.1.p locus=Potri.019G031900 ID=Potri.019G031900.1.v4.1 annot-version=v4.1 MTEVLSKTNLFSSGNYQTRQHNTISVFTKSCRLKGFPSRVKPQGLRSQISRSSSCSDFYGKRVVVHGNQSKPRRGYLPQASVVALTGLKLKYAKKWWEKG LQPNMREVTSAQDLVDSLMNAGDQLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATI KKFKDALAKHTPERCSLGPTKGLEEKELVALAANKDLSFTYTPKPVQPAPVPAEEEVAPTAGPSHSDRGLPLPLPITSSKSAQDSEEKTLVSSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.019G031900 [exp]	0	1
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.005G240700 [exp]	1.41	0.8936
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.008G024100 [exp]	3.74	0.8741
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.012G083000 [exp]	12.00	0.8443
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.004G172300 [exp]	15.71	0.8184
AT5G61670			unknown protein		Potri.012G114200 [exp]	24.00	0.8433
AT1G18210			Calcium-binding EF-hand family...		Potri.014G030100 [exp]	39.19	0.7938
AT5G64970			Mitochondrial substrate carrie...		Potri.005G165200 [exp]	59.28	0.8081
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107800 [exp]	78.84	0.7703
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105300 [exp]	94.56	0.8097
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Potri.001G193300 [exp]	103.89	0.7879

Compare expression of checked genes

Potri.019G031900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.