Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56340 178 / 7e-52 ATCRT1 RING/U-box superfamily protein (.1) AT1G55530 168 / 1e-48 RING/U-box superfamily protein (.1) AT3G13430 158 / 2e-45 RING/U-box superfamily protein (.1.2.3) AT4G26400 148 / 5e-41 RING/U-box superfamily protein (.1.2) AT3G19950 147 / 9e-41 RING/U-box superfamily protein (.1) AT1G26800 107 / 3e-27 RING/U-box superfamily protein (.1) AT2G40830 107 / 4e-26 RHC1A RING-H2 finger C1A (.1.2.3) AT3G46620 106 / 2e-25 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G56580 104 / 4e-25 RING/U-box superfamily protein (.1.2.3) AT5G59550 101 / 1e-23 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060500 [exp] 434 / 2e-152 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 194 / 3e-58 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 186 / 7e-55 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 136 / 9e-37 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 135 / 3e-36 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 131 / 2e-35 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 131 / 2e-35 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 117 / 1e-30 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 107 / 4e-27 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002637 [exp] 201 / 2e-60 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 199 / 2e-57 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 175 / 7e-51 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10010179 [exp] 137 / 5e-38 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10031422 [exp] 103 / 7e-25 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10040783 [exp] 100 / 8e-24 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10030755 [exp] 100 / 1e-23 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 100 / 2e-23 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10004712 [exp] 100 / 2e-23 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10030464 [exp] 97 / 5e-23 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF14369 [poplar] [flax] zinc_ribbon_9 zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.019G032500.3 pacid=42774186 polypeptide=Potri.019G032500.3.p locus=Potri.019G032500 ID=Potri.019G032500.3.v4.1 annot-version=v4.1 ATGAAGTTGAGAGATAAAAAAGAGAGAACATCATTGCTTTTCTCTCTTCTTTCTCTCTACCAACCAGCTAGCTTCACTATTTCCCAACAAACAGCAAATC AAGAAGATAAACATCATAACCACCCACTTCCTCTATCCACAAGAGAAAGGGAGATGGAGGCTGAAATGGTGTATCAGTACTGGTGTCACATGTGTTCTCA GATGGTGAACCCGGCAACGGAAGCTGATATTAAATGCCCGTTTTGTGATAGTGGTTTTCTGGAAGAGATGGGCAGCACGAGAGAAGTCAATAACAGTGGC TTTAATTTAGGATCAGAACATGTGTTCTCTCTTTGGGATACAATCTTACTGGACCTTACGGATGGCCTAGGCACTTCTGGTTTGAGAAGTACAGCTCAAG AAAATATTAGCAGTCCCAGTTCACCATATGAAGATGATGAACTAGACTTTGAGTCTTTACCTCGGAGAAGGGGTAGAAGAAGCTCATCTTCAGTCCAGAG CTTACTTCAAGATCTTAATCTGGGAGCAGAGAATTATGAAAATGACAGAGAGAGCACTGGCAGCAGCATTTTGATTTTGGTTAATCCTTTTAATGAAGAG GCAATAATTCTTCAGAGTCCCGATGATATGAACCAAGCTGAAAACCCAAGTCAAAACGTGTCAAGTTCTTTCCGGGACTACCTTATAGGACCTGGTGTGG ATTTACTGCTACATCATTTGGCCGAGAGTGGTCCTAACCGTTACGGGACTCCTCCAGCAAATAAAGAAGCAGTTAAAGCAATGCCAACAGTTTCCATTAA TCAGAATTTGCAGTGTTCAATATGCTTGGAAGAGTTTGAGATTGGATCTGAAGCAAAGGAAATGCCATGCAAACACAAATTCCATGGAGAGTGTATTGCT CCATGGCTGGAACTTCATAGTTCCTGCCCAGTTTGCAGGTTCCTAATGCCCTCAGATGATTCCAAGACTGAAGTAAGTCAGTCGAGAAGTGACGCAGACA CAATGGAGAACAACGATGCTAGAAACACTTGGGTCCCTATCTCATGGCCTTTTGATGGTTTGTTTCCTTTATCAGGATCTCAAATTGGTGGGAGTTCTAT TTCAGCACCCTCGTCGACTACCATGCCTGGAAGTACTTCCTTCACCGATGAAACTTGA
AA sequence Show only first row Show all	>Potri.019G032500.3 pacid=42774186 polypeptide=Potri.019G032500.3.p locus=Potri.019G032500 ID=Potri.019G032500.3.v4.1 annot-version=v4.1 MKLRDKKERTSLLFSLLSLYQPASFTISQQTANQEDKHHNHPLPLSTREREMEAEMVYQYWCHMCSQMVNPATEADIKCPFCDSGFLEEMGSTREVNNSG FNLGSEHVFSLWDTILLDLTDGLGTSGLRSTAQENISSPSSPYEDDELDFESLPRRRGRRSSSSVQSLLQDLNLGAENYENDRESTGSSILILVNPFNEE AIILQSPDDMNQAENPSQNVSSSFRDYLIGPGVDLLLHHLAESGPNRYGTPPANKEAVKAMPTVSINQNLQCSICLEEFEIGSEAKEMPCKHKFHGECIA PWLELHSSCPVCRFLMPSDDSKTEVSQSRSDADTMENNDARNTWVPISWPFDGLFPLSGSQIGGSSISAPSSTTMPGSTSFTDET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.019G032500 [exp]	0	1
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	1.41	0.9578
AT3G11320			Nucleotide-sugar transporter f...		Potri.001G247600 [exp]	3.00	0.9462
AT3G55060			unknown protein		Potri.008G047200 [exp]	3.74	0.9480
AT4G02830			unknown protein		Potri.005G208800 [exp]	3.87	0.9379
AT4G18530			Protein of unknown function (D...		Potri.003G003100 [exp]	4.00	0.8930
AT4G18060			SH3 domain-containing protein ...		Potri.011G077500 [exp]	4.24	0.9076
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Potri.004G117700 [exp]	4.69	0.9062
AT3G45400			exostosin family protein (.1)		Potri.013G067400 [exp]	4.89	0.9358
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.017G101300 [exp]	6.00	0.9396
AT1G48320			Thioesterase superfamily prote...		Potri.010G003600 [exp]	10.72	0.8761

Compare expression of checked genes

Potri.019G032500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.