Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64760 699 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 695 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 654 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 643 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 507 / 1e-177 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 496 / 5e-173 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 475 / 4e-165 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 472 / 7e-164 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 436 / 5e-150 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 427 / 4e-146 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059700 [exp] 857 / 0 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 559 / 0 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 520 / 0 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 489 / 4e-170 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 484 / 1e-168 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 482 / 1e-167 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 473 / 8e-164 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 462 / 7e-160 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 459 / 1e-158 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031098 [exp] 735 / 0 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002633 [exp] 729 / 0 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 723 / 0 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10006811 [exp] 499 / 3e-174 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 484 / 5e-169 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 484 / 8e-169 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10005788 [exp] 494 / 2e-165 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 473 / 4e-164 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 473 / 7e-164 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039095 [exp] 464 / 9e-161 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.019G032900.2 pacid=42774743 polypeptide=Potri.019G032900.2.p locus=Potri.019G032900 ID=Potri.019G032900.2.v4.1 annot-version=v4.1 ATGGGCACCTGTTGGTTTCTCAAATTAGTTTTGGTTTTAGGCCTTTTAAGGAATTGTGTTGATGGTCTTGGTGTTAATTGGGGAACTATGGCTATACGTA AATTGCCACCAGAAACAGTTGTTCAAATGTTGAAGGATAATGGGATCCTAAAAGTGAAGCTTTTTGATGCAGACCAAAATACAATGACTTCACTTGCTGG TACTGGCATTGAAGTTATGGTTGCTATTCCTAATGACCAGCTTGCTGTGATGGGTGATTATAATCGTGCTAAAGATTGGGTAAAGAGGAATGTAACTCGT TATGATTTTGACGGAGGAGTTACCATCAAGTATGTAGCAGTTGGTAATGAGCCTTTTCTCAAATCCTACAATGGTTCATTCTTAAACACCACCTTCCCAG CACTTCGGAACATACAAAATGCCCTCAATGATGCTGGGGTTGGAGACTCCATAAAGGCCACTGTACCCTTTAATGCTGACGTCTATAACTCCCCAGATGA CCAAGCCTATCCATCTTCTGGAAGATTCCGCAGTGATATTAATGACATTATGACCGAGATGGTTCAGTTTTTGGGTCAGAACAACGCACCTTTCACTGTG AACATCTATCCTTTCTTGAGTCTCTATGGGAATGACGATTTCCCATTTGATTATGCTTTCTTTGACGGGGCTCCTCAACCTGTTGTAGATAGAGGTACTG GGATTCAGTACACCAATGTTTTTGATGCTAACTTCGACACCTTGGTCTCGGCCCTGAAAGCAGCGGGCCATGGGGATATGCCCATTATAGTAGGTGAGGT AGGTTGGCCAACAGATGGGGACAAGAATGCCAACATAGGTAATGCTATTAGATTTTACAATGGGCTTTTACCACGACTTGCAGGCAACAGAGGCACCCCA CTTCGGCCTGGCTACATAGAAGTTTACTTGTTTGGTCTTCTTGACGAGGATGCCAAGAGCATCGCTCCTGGGAATTTTGAGCGCCATTGGGGAATCTTTC GATATGATGGGCAGCCTAAGTTTCCAATGGATCTTTCTGGTCAGGTTGCAAACAAGTGGCTAGTGGGTGCGCAGAATGTTCAATATCTACCGTCAAAATG GTGCATGTTTAATCCAAACGCCAAGGATCTTAGCAAGCTTGCAGATAACATAAATTATGCCTGCTCCCGTTCAGATTGCACGGCACTTGGATATGGCTCC TCCTGTAATGGCCTGGACACCAATGGGAATGCTTCATATGCATTCAATATGTACTACCAGGTGCAAAACCAGGATGAATTCGCCTGTAATTTCGAGGGCC TGGCCATGGTTACCGAACAGAATATTTCTCAAGGGAACTGCAATTTCACCATCCAGATAGTAGCTTCATCTTCCTCCTCTCTCACCCTGTCATTGATGGG TTCTGTATTTGTAACAGCCTTGTTAACATCCCTTTTTCTATAG
AA sequence Show only first row Show all	>Potri.019G032900.2 pacid=42774743 polypeptide=Potri.019G032900.2.p locus=Potri.019G032900 ID=Potri.019G032900.2.v4.1 annot-version=v4.1 MGTCWFLKLVLVLGLLRNCVDGLGVNWGTMAIRKLPPETVVQMLKDNGILKVKLFDADQNTMTSLAGTGIEVMVAIPNDQLAVMGDYNRAKDWVKRNVTR YDFDGGVTIKYVAVGNEPFLKSYNGSFLNTTFPALRNIQNALNDAGVGDSIKATVPFNADVYNSPDDQAYPSSGRFRSDINDIMTEMVQFLGQNNAPFTV NIYPFLSLYGNDDFPFDYAFFDGAPQPVVDRGTGIQYTNVFDANFDTLVSALKAAGHGDMPIIVGEVGWPTDGDKNANIGNAIRFYNGLLPRLAGNRGTP LRPGYIEVYLFGLLDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQVANKWLVGAQNVQYLPSKWCMFNPNAKDLSKLADNINYACSRSDCTALGYGS SCNGLDTNGNASYAFNMYYQVQNQDEFACNFEGLAMVTEQNISQGNCNFTIQIVASSSSSLTLSLMGSVFVTALLTSLFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64760			O-Glycosyl hydrolases family 1...		Potri.019G032900 [exp]	0	1
AT4G14310			Transducin/WD40 repeat-like su...		Potri.010G069200 [exp]	6.16	0.7996
AT5G55830			Concanavalin A-like lectin pro...		Potri.011G093700 [exp]	56.38	0.6652
AT1G80950			Phospholipid/glycerol acyltran...		Potri.002G134100 [exp]	60.09	0.6716
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G051500 [exp]	71.28	0.7418
AT1G02180			ferredoxin-related (.1)		Potri.014G044500 [exp]	133.22	0.6729
AT1G10840		TIF3H1	translation initiation factor ...		Potri.014G147100 [exp]	146.61	0.7173	TIF3.5
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.015G042600 [exp]	182.44	0.6949
AT5G05520			Outer membrane OMP85 family pr...		Potri.008G071800 [exp]	211.42	0.6837
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.013G128600 [exp]	222.84	0.6888
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Potri.001G246500 [exp]	252.42	0.6816

Compare expression of checked genes

Potri.019G032900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.