Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32890 127 / 2e-34 GATA GATA9 GATA transcription factor 9 (.1) AT5G25830 127 / 4e-34 GATA GATA12 GATA transcription factor 12 (.1) AT5G66320 125 / 1e-33 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G24050 123 / 3e-33 GATA GATA1 GATA transcription factor 1 (.1) AT3G60530 121 / 8e-33 GATA GATA4 GATA transcription factor 4 (.1) AT1G08010 121 / 2e-32 GATA GATA11 GATA transcription factor 11 (.1.2) AT4G36240 120 / 2e-32 GATA GATA7 GATA transcription factor 7 (.1) AT2G45050 119 / 6e-32 GATA GATA2 GATA transcription factor 2 (.1) AT3G54810 118 / 6e-31 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT1G08000 116 / 2e-30 GATA GATA10 GATA transcription factor 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059600 [exp] 411 / 1e-145 AT5G25830 128 / 1e-34 GATA transcription factor 12 (.1) Potri.010G223300 [exp] 125 / 2e-33 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.004G211800 [exp] 124 / 2e-33 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.008G038900 [exp] 125 / 3e-33 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.002G142800 [exp] 122 / 4e-33 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.001G188500 [exp] 122 / 1e-32 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.003G174800 [exp] 121 / 1e-32 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.014G058600 [exp] 120 / 1e-32 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.006G237700 [exp] 122 / 4e-32 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028178 [exp] 120 / 4e-32 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10031096 [exp] 114 / 8e-32 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10023684 [exp] 117 / 1e-31 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10009227 [exp] 120 / 2e-31 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10037994 [exp] 120 / 2e-31 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10011430 [exp] 119 / 3e-31 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037572 [exp] 118 / 4e-31 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10041810 [exp] 116 / 4e-31 AT5G66320 177 / 1e-54 GATA transcription factor 5 (.1.2) Lus10021466 [exp] 117 / 5e-31 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2) Lus10016092 [exp] 117 / 5e-31 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.019G033000.1 pacid=42774099 polypeptide=Potri.019G033000.1.p locus=Potri.019G033000 ID=Potri.019G033000.1.v4.1 annot-version=v4.1 ATGGATTTTTGCCAGAATGTGACGGTTTCCGGTGAGTATCATCACCAGCAAGAGCATGTCCTTGCTTCCCCTCCTCCTTGCTCTACGCTTACTGCCGCCG CCGCTAGTAATAGTCCTCTTGATGACCTCTTCTCTGCTCAAAACACGGAAGTTGATTTTAGCATGGAATGGCTGTCAGTATTTGTAGAAGACTGCTTATC CAGCACAGGAAACTGCCTCCCAGCACCAACAAATGATGCTCAAAAGACAAACACAGAAGAAAACCCCCCAAAACCCTTGCAACAGAAACCTCAAGACCAA GAAAACCCATCTTCCTTGAAGAAACTTGCAGTCCCAGGAAAGGCAAGAAGCAAGAGAAGAAGGACTGCTGGTGACAGAAGCAGAAACCTATTAACTAGCT GGTGTTATACCAACCAAGCCTTTAATATGGCATGCTCAGACCCTCCTTTGCTCCAGCAAACACATTGGTTAGCTGATAGTGAACTCATTACGCCCATAAA AGATGGTAGCGACAACAGAGGCACAGATGGTGAGGTACAAGAAAAATCAGGAGCGGAAGGTGATGTTGAGGAGGACCTAGGAAAGGTATTAGAAGTAGGG AGTAGCAGTAGTAAGGACAGTACAGGGAGTTTGGAGAGCGACAATGGACAGCAACAACCAAGGAGGTGCACCCATTGCCTTGCACAAAGGACCCCACAAT GGAGGGCAGGACCATCGGGTCCAAAAACACTCTGCAATGCATGTGGAGTAAGATACAAGTCAGGCAGGTTACTGCCAGAGTATAGGCCAGCAAAGAGCCC TACTTTTGTGAGCTATTTGCACTCCAACTCTCATAAGAAGGTAATGGAGATGAGAATGGCTAACTCTGCTGTCTTCAATACCTAG
AA sequence Show only first row Show all	>Potri.019G033000.1 pacid=42774099 polypeptide=Potri.019G033000.1.p locus=Potri.019G033000 ID=Potri.019G033000.1.v4.1 annot-version=v4.1 MDFCQNVTVSGEYHHQQEHVLASPPPCSTLTAAAASNSPLDDLFSAQNTEVDFSMEWLSVFVEDCLSSTGNCLPAPTNDAQKTNTEENPPKPLQQKPQDQ ENPSSLKKLAVPGKARSKRRRTAGDRSRNLLTSWCYTNQAFNMACSDPPLLQQTHWLADSELITPIKDGSDNRGTDGEVQEKSGAEGDVEEDLGKVLEVG SSSSKDSTGSLESDNGQQQPRRCTHCLAQRTPQWRAGPSGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMANSAVFNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.019G033000 [exp]	0	1
AT3G18490			Eukaryotic aspartyl protease f...		Potri.015G051800 [exp]	1.41	0.8689
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	2.44	0.8401
AT1G65900			unknown protein		Potri.017G139400 [exp]	4.00	0.8341
AT4G39790			Protein of unknown function (D...		Potri.007G090300 [exp]	6.00	0.8258
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.009G149700 [exp]	8.12	0.8599	ATCSLA02.1
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	9.38	0.7940
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.009G020400 [exp]	10.04	0.7367
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	14.42	0.8033
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.001G278300 [exp]	15.29	0.8143
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.008G171700 [exp]	15.71	0.7970

Compare expression of checked genes

Potri.019G033000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.