Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TBP1.2,GTF902
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55520 377 / 3e-135 ATTBP2, TBP2 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) AT3G13445 375 / 2e-134 TFIID-1, TBP1 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) AT3G13440 40 / 0.0005 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059300 [exp] 405 / 3e-146 AT1G55520 380 / 9e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020260 [exp] 402 / 7e-145 AT1G55520 380 / 3e-136 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10002634 [exp] 400 / 6e-144 AT1G55520 382 / 7e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10031531 [exp] 337 / 1e-119 AT3G13445 333 / 4e-118 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) Lus10017716 [exp] 125 / 2e-36 AT1G55520 125 / 1e-36 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10015150 [exp] 101 / 6e-28 AT1G55520 100 / 3e-28 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10033675 [exp] 53 / 3e-09 AT3G24060 72 / 4e-17 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0407 [poplar] [flax] TBP-like PF00352 [poplar] [flax] TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Representative CDS sequence Show only first row Show all	>Potri.019G033300.1 pacid=42773923 polypeptide=Potri.019G033300.1.p locus=Potri.019G033300 ID=Potri.019G033300.1.v4.1 annot-version=v4.1 ATGGCAGAGCAAGGGGGCTTGGAAGGTAGCCAGCCAGTGGATCTTTCCAAGCATCCTTCTGGCATTGTTCCCATCCTCCAGAACATTGTTTCAACTGTGA ACTTAGATTGCAGGCTGGATCTTAAGCAAATTGCCCTGCAAGCCCGTAATGCAGAATACAACCCCAAGCGTTTTGCTGCCGTCATCATGCGGATTAGGGA ACCAAAAACTACAGCATTGATTTTTGCATCTGGAAAGATGGTGTGCACAGGTGCCAAGAGCGAACAACAGTCAAAGCTTGCTGCTAGAAAGTATGCACGA ATTATCCAAAAGCTTGGCTTTGCTGCCAAATTTAAGGACTTTAAAATTCAGAATATTGTTGGCTCGTGTGATGTCAAGTTCCCCATCAGACTTGAAGGGC TTGCATACTCCCATGGTGCTTTCTCAAGTTATGAACCTGAAATCTTTCCAGGCTTAATATATCGAATGAAACAACCAAAGATTGTGCTTCTTATTTTTGT CTCAGGAAAAATTGTGATCACCGGAGCCAAGGTGAGAGATGAGACATACACAGCCTTTGAAAACATATACCCTGTCCTTACAGAGTTTAGGAAAGTCCAG CAATGA
AA sequence Show only first row Show all	>Potri.019G033300.1 pacid=42773923 polypeptide=Potri.019G033300.1.p locus=Potri.019G033300 ID=Potri.019G033300.1.v4.1 annot-version=v4.1 MAEQGGLEGSQPVDLSKHPSGIVPILQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYAR IIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPEIFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ Q

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.019G033300 [exp]	0	1	TBP1.2,GTF902
AT1G77680			Ribonuclease II/R family prote...		Potri.005G174800 [exp]	5.29	0.7828
AT5G54920			unknown protein		Potri.001G423200 [exp]	9.79	0.7308
AT4G16180			unknown protein		Potri.010G146800 [exp]	12.96	0.7391
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	15.49	0.7061
AT1G34270			Exostosin family protein (.1)		Potri.019G086800 [exp]	16.73	0.7573
AT1G09157			Protein of unknown function (D...		Potri.010G168400 [exp]	23.04	0.6965
AT5G26330			Cupredoxin superfamily protein...		Potri.002G156100 [exp]	24.24	0.6788
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Potri.004G206000 [exp]	25.53	0.7624
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	27.16	0.7573
AT1G16900			Alg9-like mannosyltransferase ...		Potri.011G110800 [exp]	29.73	0.7004

Compare expression of checked genes

Potri.019G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.