Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G13180 307 / 7e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G04000 302 / 1e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 301 / 4e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 114 / 2e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 111 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G54870 104 / 4e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 100 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 98 / 5e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 97 / 2e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059100 [exp] 379 / 4e-134 AT3G03980 360 / 1e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033600 [exp] 347 / 6e-121 AT3G03980 279 / 4e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G059000 [exp] 321 / 5e-111 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 127 / 1e-34 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 126 / 3e-34 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105700 [exp] 109 / 2e-28 AT2G47140 251 / 9e-84 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G104800 [exp] 107 / 1e-27 AT2G47140 243 / 2e-80 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105600 [exp] 105 / 4e-27 AT2G47140 230 / 1e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 103 / 2e-26 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020265 [exp] 354 / 3e-124 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002628 [exp] 353 / 1e-123 AT3G03980 358 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 123 / 5e-33 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 116 / 2e-29 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041518 [exp] 111 / 2e-28 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 106 / 4e-27 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 105 / 1e-26 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 104 / 2e-26 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 104 / 3e-26 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 102 / 1e-25 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.019G033500.1 pacid=42774048 polypeptide=Potri.019G033500.1.p locus=Potri.019G033500 ID=Potri.019G033500.1.v4.1 annot-version=v4.1 ATGGCAACAACAGACCTGGTGAACCCATCATCTCTCCCACTTCAAGATCGGGTAGCCATAGTGACAGGCTCATCCCGAGGTATTGGTAAAGCCATAGCCA TCCACTTGGCCTCATTAGGTGCAAAACTTGTCATCAACTACGCTTCTAACAAGGACCAAGCTGATCTTGTTGCTGAAGAGATCAATTCTTGCTGTTCTGA GAATACCCCACATGCTACGGTGGTTCAAGCTGACATTTCTGTGCCTGCCCAGGTTAAGTTATTGTTTGATGAGGCTGAAAGAGTGTTTGGATCACAGGTT CATGTCTTGGTGAATTCAGCTGCCATTTCTAACACCAAGTACCCTACAATTGCCAACACTTCAGTAGAGGATTTTGATCGTATTTTCAGTGTCAATTGCA GAGGCACGTTCTTATGCTGCAAAGAGGCAGCAAAGAGAATTAAACAGGGTGGTGGGGGTAGAATCATATTGTTATCGAGCTCATCCGTAGGTGCATTGAG GCCAAATTCAGCAACATACACTGCATCAAAAGCAGCAGTGGAGACAATGACAAAAATACTAGCGAAGGAGCTCAAAGGGACTGGTATTACTGCAAATTGT GTGGCACCAGGGCCAATTGCCACTGAAATGTTCTTCGTCGGTAGGAGTGAGGAGCATGTGAAGAGAGTGATTGAGGTGTGCCCGCATGGGAGGCTTGGCG AGACCAAGGATGTAGCTCCTCTTGTTGGGTTCTTGGCTAGTGATGCCGGTGAATGGATAAATGGACAAGTTATTCGTGTCAATGGTGGCTATGTTTAA
AA sequence Show only first row Show all	>Potri.019G033500.1 pacid=42774048 polypeptide=Potri.019G033500.1.p locus=Potri.019G033500 ID=Potri.019G033500.1.v4.1 annot-version=v4.1 MATTDLVNPSSLPLQDRVAIVTGSSRGIGKAIAIHLASLGAKLVINYASNKDQADLVAEEINSCCSENTPHATVVQADISVPAQVKLLFDEAERVFGSQV HVLVNSAAISNTKYPTIANTSVEDFDRIFSVNCRGTFLCCKEAAKRIKQGGGGRIILLSSSSVGALRPNSATYTASKAAVETMTKILAKELKGTGITANC VAPGPIATEMFFVGRSEEHVKRVIEVCPHGRLGETKDVAPLVGFLASDAGEWINGQVIRVNGGYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03980			NAD(P)-binding Rossmann-fold s...		Potri.019G033500 [exp]	0	1
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Potri.008G198600 [exp]	2.23	0.7865	PtrMsrB3
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.015G032900 [exp]	5.38	0.8248	Pt-GBP.7
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.002G105600 [exp]	6.32	0.7883
AT1G04550	AUX_IAA	BDL, IAA12	indole-3-acetic acid inducible...		Potri.018G127800 [exp]	8.48	0.7716
AT3G15351			unknown protein		Potri.002G142000 [exp]	10.00	0.8048
AT2G04900			unknown protein		Potri.014G164500 [exp]	10.39	0.7851
AT1G30910			Molybdenum cofactor sulfurase ...		Potri.003G154900 [exp]	15.19	0.7971
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.008G133400 [exp]	17.02	0.7343
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.001G122700 [exp]	17.34	0.7839
AT3G16175			Thioesterase superfamily prote...		Potri.003G051900 [exp]	19.23	0.7272

Compare expression of checked genes

Potri.019G033500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.