Plant FIBer expression Database

Potri.019G033800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54390 375 / 4e-132 ING2 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6)
AT3G24010 100 / 6e-25 ATING1 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G058800
[exp]
456 / 4e-164 AT1G54390 372 / 4e-131 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6)
Potri.003G174000
[exp]
107 / 1e-27 AT3G24010 281 / 5e-96 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033830
[exp]
358 / 5e-125 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6)
Lus10018974
[exp]
301 / 1e-102 AT1G54390 328 / 2e-112 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6)
Lus10043140
[exp]
112 / 2e-29 AT3G24010 273 / 5e-93 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10032609
[exp]
59 / 1e-09 AT1G04610 248 / 7e-75 YUCCA 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0390 zf-FYVE-PHD PF00628 PHD PHD-finger
CL0390 PF12998 ING Inhibitor of growth proteins N-terminal histone-binding
Representative CDS sequence
>Potri.019G033800.1 pacid=42773018 polypeptide=Potri.019G033800.1.p locus=Potri.019G033800 ID=Potri.019G033800.1.v4.1 annot-version=v4.1
ATGGCAATTGCTCGAACTGGAGTATACGTTGATGATTACCTTGAGTATGCAAATACATTACCAGCTGAGCTTCAACGGCTTCTTAATACTATTAGGGAAC
TTGATGACCGATCCCAATCAATGATAAATCAAACAAGGCAACAGACAAACTACTGTCTAGGATTGGCATCTCAAAGCTCGAAAAAAGGGAATGGTAGTAT
TTATAATTGCTACAACACTAATAATAGGGAAGAGGATGACACAGTCGAGAAAATGAGGAAGGATATTGAGGCAAATCAGGATAATGCATTGATTTTGTGC
ACGGAGAAGGTTTTGTTGGCACGGCAAGCTTATGAGCTTATAGACAGCCATATAAAACGACTTGATGAGGATCTGAACAACTTTGCAGAAGATTTGAAGC
ATGAGGGAAAACTATCACCAGATGAGCCGGCAATTCTTCCTCCACTGCCTTTAATAGTCCCTAAAATTGAGAAACGCAGGAACTTTTATGGAACACCTCA
ATCAAAAAGGATTGATTTCAGGGATCGGTATTGGGACAGAGAACGTGATAGGGATTTTGAGCTCATGCCTCCTCCAGGAAGCCATAAAAAGGATTTCACT
GTTCCTGTTGAAGCTGAGCAACCCATTGATCCGAATGAACCTACCTACTGTGTCTGCCATCAGGTGTCCTTTGGAGATATGATTGCTTGTGATAACGAGA
ATTGCCAAGGAGGTGAATGGTTCCATTATTCATGTGTTGGGCTGACACCAGAGACAAGATTCAAGGGGAAGTGGTACTGTCCAACCTGCAGGAATCTACC
CCAATTTCAATGGAACAGAAAAGGAAACAGATGTGTACATATCCACAACCAGGCCACATGA
AA sequence
>Potri.019G033800.1 pacid=42773018 polypeptide=Potri.019G033800.1.p locus=Potri.019G033800 ID=Potri.019G033800.1.v4.1 annot-version=v4.1
MAIARTGVYVDDYLEYANTLPAELQRLLNTIRELDDRSQSMINQTRQQTNYCLGLASQSSKKGNGSIYNCYNTNNREEDDTVEKMRKDIEANQDNALILC
TEKVLLARQAYELIDSHIKRLDEDLNNFAEDLKHEGKLSPDEPAILPPLPLIVPKIEKRRNFYGTPQSKRIDFRDRYWDRERDRDFELMPPPGSHKKDFT
VPVEAEQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTPETRFKGKWYCPTCRNLPQFQWNRKGNRCVHIHNQAT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G54390 ING2 INHIBITOR OF GROWTH 2, PHD fin... Potri.019G033800
[exp]
0 1
AT4G18905 Transducin/WD40 repeat-like su... Potri.007G019601
[exp]
2.82 0.7177
AT3G54840 ARA6, AtRABF1, ... Ras-related small GTP-binding ... Potri.010G226300
[exp]
3.00 0.6735 ARA6.1
AT2G18850 SET domain-containing protein ... Potri.006G168900
[exp]
3.87 0.6962
AT4G28990 RNA-binding protein-related (.... Potri.006G160500
[exp]
6.48 0.6798
AT5G49230 HRB1 HYPERSENSITIVE TO RED AND BLUE... Potri.019G027300
[exp]
6.92 0.6616
AT2G40270 Protein kinase family protein ... Potri.008G072100
[exp]
10.58 0.6921
AT5G47390 MYB myb-like transcription factor ... Potri.001G155300
[exp]
11.61 0.6833
AT5G42520 BBR_BPC BPC6, BBR/BPC6,... ARABIDOPSIS THALIANA BASIC PEN... Potri.005G235900
[exp]
14.49 0.6621
AT3G01360 Family of unknown function (DU... Potri.005G122800
[exp]
23.45 0.7116
AT2G01060 GARP myb-like HTH transcriptional r... Potri.006G000800
[exp]
23.87 0.6819

Potri.019G033800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.