Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54385 608 / 0 ARM repeat superfamily protein (.1.2) AT3G03970 353 / 2e-114 ARM repeat superfamily protein (.1.2.3) AT1G27210 43 / 0.0005 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058700 [exp] 1044 / 0 AT1G54385 599 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010672 [exp] 695 / 0 AT1G54385 556 / 0.0 ARM repeat superfamily protein (.1.2) Lus10007428 [exp] 687 / 0 AT1G54385 549 / 0.0 ARM repeat superfamily protein (.1.2) Lus10002627 [exp] 478 / 1e-162 AT1G54385 394 / 7e-131 ARM repeat superfamily protein (.1.2) Lus10020266 [exp] 468 / 5e-159 AT1G54385 402 / 4e-134 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G033900.1 pacid=42773723 polypeptide=Potri.019G033900.1.p locus=Potri.019G033900 ID=Potri.019G033900.1.v4.1 annot-version=v4.1 ATGGAGAGCCCTTCGAATTGGCAACAACGAAGAGCCTTTGTTAGGTCAACAATGGGAAGAAATCTGAGTCCAATACTGCGGCAAGAATTGGCAAATCTTG ACAAAGATGCTGATAGTCGTAAATCAGCAATGAAAGCACTGAAATCATATGTGAGAGGCTTGGATTCTAAGGCAATCCCACAATTTCTTGCTCAAGTTTC CGAAACAAAAGAAACTGGGTCTTTGTCCGGTGAATACACAATTTCACTGTATGAAGTTCTTGCGCGTGTCCATGGAGTTAATATTGTAACTCAGGTTGAT AGTATCATGGCTACCATAATCAAAACTTTAGCATCAAGTGCAGGATCTTTTCCTCTTCAACAAGCGTGCTCCAAGGTGGTACCAGCAATTGCAAGATATG GGATTGAACCAACGACCCCAGAGCATAAGAAAAGGCATATAATTCACTCGCTTTGTAAGCCTCTTTCAGAAGCTCTCTTAGGTTCTCAAGAATGCCTGAC TTCAGGGGCTGCCCTTTGCCTGAAGGCTCTAGTGGACTCAGATAATTGGCGATTTGCTTCAGATGAGATGGTGAATAGGGTTTGTCAGAATGTGGCTGTT TCTTTGGAGGAGAAGCCCACGCAAACTAATTCACACATGGCCCTGGTAATGGCTTTGGCTAAGCATAATGCTTTGATAGTTGAAGCATATGCAAGACTCT TGGTACAATCTGGATTGCGCATCTTGAAAGCTGGGGTCTTAGAGGGTAATTCTCAGAAACGATTATCGGCTATCCAAATGGTCAATTTCTTGATGAAATG TCTGGATCCTAGGAGCATATTCTCAGAAATTGATTTGATAATTGAGGAGATGAATGAGAGCCAGTCCGATCCAATGGCATATGTGAGTGGAGCTGCATTC GAAGCCTTGCAAACTGCAAAGAAAATTGCTGCAGAGAAAGGGTCAAAATTTGAGAAGAGTTCTGGTTCAATTACTGGATCAAACTTTGGCAGGAGAGACC ACAGAGGAAGGAGAAATTTGTCCAGTGCCTATGGTGATCAATCTCCAGCATCTATATCACCTGAATCACAAACTCTTGATTCCTTTATGGAATATGAATC TTTCATTGAGTCACCTATTTCGACAACTAATACTTCTTCCAGTGAGTATGACCGTGGGAGTGTGAATCGGAAACTATGGAGTTTTGAGAATGGAGGGGTG GACGTATCTCTAAAAGATGGTTTATTTTCAGAGTCTCAGGGAAGTCCCATCCATGATGCATTCTCTGATCAGTCTGGGCTACATGAACTTACTGAAAACA GAGGAAGTTGCACGGGTGAATTTGCAGGTTTCTTGCCTAGAAGTCCTAGAAATGGACTATCGAGGTGCACCACTCCCAGTCCTCAGCGGTCACGCTCTCA TATAAATGTCAACAACGTTAGCATCTTCACAACTCCCAGGAAGCTCGTACACGCTCTCCAGGATCCTAATGATTTGGATTCAGATTTCTCTGAGAAACAG AATGAAAGGTTCGGAAGTCCATGCTCGTGCAAATTTGATTATAGGCCCACTCTGAGGTTAAAACAAAATGGCTTTCAGCAGGATATGGGTTCGGAGGTCA ATGAGAACGGAAATTCATATGCTGGTGGTGAGCAGTTACAAGGTCCCTCTGAATCAGTGGCATCAACAGAGGAAATTCCGGTCAACACTGATACGCAAGT GTCTACAGAGGTGATTCTTGGAAAGAAAACTGATGATCCTAAAAAAAATTGCGCTGAAAGGGAAATGAGGAAGACTTCTTCCCTGTTAGTTGTTGGGTTC TGCATTGCTTTGCTAGCAATTCTTGCCTCATTAATGTTCATTTATCTGCAGGATGATAGTCATCATATGGTTCCAACTTGA
AA sequence Show only first row Show all	>Potri.019G033900.1 pacid=42773723 polypeptide=Potri.019G033900.1.p locus=Potri.019G033900 ID=Potri.019G033900.1.v4.1 annot-version=v4.1 MESPSNWQQRRAFVRSTMGRNLSPILRQELANLDKDADSRKSAMKALKSYVRGLDSKAIPQFLAQVSETKETGSLSGEYTISLYEVLARVHGVNIVTQVD SIMATIIKTLASSAGSFPLQQACSKVVPAIARYGIEPTTPEHKKRHIIHSLCKPLSEALLGSQECLTSGAALCLKALVDSDNWRFASDEMVNRVCQNVAV SLEEKPTQTNSHMALVMALAKHNALIVEAYARLLVQSGLRILKAGVLEGNSQKRLSAIQMVNFLMKCLDPRSIFSEIDLIIEEMNESQSDPMAYVSGAAF EALQTAKKIAAEKGSKFEKSSGSITGSNFGRRDHRGRRNLSSAYGDQSPASISPESQTLDSFMEYESFIESPISTTNTSSSEYDRGSVNRKLWSFENGGV DVSLKDGLFSESQGSPIHDAFSDQSGLHELTENRGSCTGEFAGFLPRSPRNGLSRCTTPSPQRSRSHINVNNVSIFTTPRKLVHALQDPNDLDSDFSEKQ NERFGSPCSCKFDYRPTLRLKQNGFQQDMGSEVNENGNSYAGGEQLQGPSESVASTEEIPVNTDTQVSTEVILGKKTDDPKKNCAEREMRKTSSLLVVGF CIALLAILASLMFIYLQDDSHHMVPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54385			ARM repeat superfamily protein...		Potri.019G033900 [exp]	0	1
AT5G20850		ATRAD51	RAS associated with diabetes p...		Potri.006G135200 [exp]	1.00	0.9702
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	1.41	0.9689
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	3.46	0.9433
AT1G54385			ARM repeat superfamily protein...		Potri.013G058700 [exp]	3.87	0.9372
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	4.89	0.9366
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	8.36	0.9359
AT3G54560		HTA11	histone H2A 11 (.1)		Potri.002G046400 [exp]	8.48	0.9343
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	8.94	0.9430	Pt-SYP111.1
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Potri.003G104700 [exp]	11.48	0.9199
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.005G210000 [exp]	12.00	0.9184

Compare expression of checked genes

Potri.019G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.