Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55370 267 / 9e-87 NDF5 NDH-dependent cyclic electron flow 5 (.1.2) AT1G64770 103 / 8e-25 PnsB2, NDH45, NDF2 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) AT3G61610 57 / 5e-09 Galactose mutarotase-like superfamily protein (.1) AT4G25900 55 / 4e-08 Galactose mutarotase-like superfamily protein (.1) AT4G23730 52 / 2e-07 Galactose mutarotase-like superfamily protein (.1) AT5G57330 50 / 1e-06 Galactose mutarotase-like superfamily protein (.1) AT5G14500 46 / 2e-05 aldose 1-epimerase family protein (.1) AT3G01590 41 / 0.0008 Galactose mutarotase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034100 [exp] 125 / 1e-32 AT1G64770 417 / 3e-146 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Potri.002G167200 [exp] 58 / 3e-09 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 50 / 1e-06 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 49 / 2e-06 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 48 / 5e-06 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 47 / 9e-06 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.001G095300 [exp] 46 / 2e-05 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 46 / 2e-05 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002626 [exp] 309 / 6e-103 AT1G55370 234 / 4e-74 NDH-dependent cyclic electron flow 5 (.1.2) Lus10020267 [exp] 297 / 4e-98 AT1G55370 234 / 2e-74 NDH-dependent cyclic electron flow 5 (.1.2) Lus10010671 [exp] 108 / 3e-26 AT1G64770 413 / 1e-144 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Lus10007429 [exp] 102 / 3e-24 AT1G64770 408 / 2e-142 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Lus10003035 [exp] 57 / 7e-09 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 57 / 7e-09 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 57 / 1e-08 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 56 / 1e-08 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 51 / 7e-07 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 51 / 1e-06 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G034000.1 pacid=42773465 polypeptide=Potri.019G034000.1.p locus=Potri.019G034000 ID=Potri.019G034000.1.v4.1 annot-version=v4.1 ATGGCTTTGAGTTCTCTCTTTTCACTGAGCTTCACTTCTACCCCCTGCACAAGTCTCACCAACAGGCATTTATTTAATTTCCACCCTCATCTTCACTCTA GTTCTCTTCAATACTCTAGCAAGAAGAGAGAATTCCCACTTCCATCAGTGGCTTCAATTCCATACCAACCAATCAATGTAGACTACTTGGAAGAAGAATT CAGTGGCCATGGAGTCACTTTCGAACGTCTTAGTGATAGCTGCGTTGCCAAGATGACGGTGGAAAATGGGAGCAGCGTCACATTGATGCTACCAAGCGGC TTAATCACATCATACAAGGCTCGCATGTGGCATGGAGGTACAGTTGAGCTGCTGCAAACTTCAGTCTTGGAGGGGGAGGATGGAAGTGCTGCTATACGAG GAGGGGTTTCTCCAGCGTTTAACTTTGACAGTGATGGTGAAATTTCATGGTCTCCAAGTACTTGGGCTCTCAAGGATATTAGAGGAGATTCTCATGACAC TATTCAGGTTGAAATGGTAAGCACTGATGCAAAAGATATGGTTGAAGTAAGATACATCTTGAGTCTCCGTGAAGAAACCTTAAGCTCAGAGCTAACAGTC TCAAACTTAAAATCTTCATCGATCCAAATGAGGGGCGGCATCATTAGCCATCTGACAGTAAGCACACCAGAAGCAACCTTTGCATATGGATTAGAGGGAT CGGACTTCTATAACAGGCCTGTGTTCTTATCAAATTTCGGCATTGTTCCTCCTGACCTTAGCCAAAAACGTGGATTTGGTTCTGGCCAACTGTGGGGCAA TTTGGGGTTCAATGGTTTTCTTACTGGCTGGGATGCAAGAAACCAGAAGAACGGTGATAAAGGAAACGATAGTCTAATAGAGAGCGAAGAAATGGAGGGT GAAGAGAATGATAATTATAAGAATTTAACTGAGGAAATGAGCAGGATTTACACCAGCGCACCGCGAGACTTCACAATCATTGACAGGGGCAGAAGAAACT CAGTTGTTGTAGGAAGGGAGGGGTTCGAGGAACTATACATATTTAGTCCTGGTTCAAGCCGTGAAAGCTATGGCATGTATTCTTTTATATGTGTAGGCCA ATCAGCCATGCTTAAACCAGTAACTTTGAATCCTGGAGACGCATGGACAGGCAGTCAGCATTTACACAATCCAAATCTCTGA
AA sequence Show only first row Show all	>Potri.019G034000.1 pacid=42773465 polypeptide=Potri.019G034000.1.p locus=Potri.019G034000 ID=Potri.019G034000.1.v4.1 annot-version=v4.1 MALSSLFSLSFTSTPCTSLTNRHLFNFHPHLHSSSLQYSSKKREFPLPSVASIPYQPINVDYLEEEFSGHGVTFERLSDSCVAKMTVENGSSVTLMLPSG LITSYKARMWHGGTVELLQTSVLEGEDGSAAIRGGVSPAFNFDSDGEISWSPSTWALKDIRGDSHDTIQVEMVSTDAKDMVEVRYILSLREETLSSELTV SNLKSSSIQMRGGIISHLTVSTPEATFAYGLEGSDFYNRPVFLSNFGIVPPDLSQKRGFGSGQLWGNLGFNGFLTGWDARNQKNGDKGNDSLIESEEMEG EENDNYKNLTEEMSRIYTSAPRDFTIIDRGRRNSVVVGREGFEELYIFSPGSSRESYGMYSFICVGQSAMLKPVTLNPGDAWTGSQHLHNPNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Potri.019G034000 [exp]	0	1
AT1G51100			unknown protein		Potri.011G132900 [exp]	1.41	0.9787
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	1.73	0.9803
					Potri.004G019733 [exp]	2.23	0.9704
AT1G27510			Protein of unknown function (D...		Potri.015G075000 [exp]	3.00	0.9762
AT2G35130			Tetratricopeptide repeat (TPR)...		Potri.012G123600 [exp]	3.46	0.9626
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015400 [exp]	3.46	0.9730
AT2G20540		MEF21	mitochondrial editing factor ...		Potri.001G471600 [exp]	8.60	0.9362
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G073700 [exp]	8.83	0.9424
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	10.58	0.9520
AT3G29670		PMAT2	phenolic glucoside malonyltran...		Potri.004G096300 [exp]	11.48	0.9549

Compare expression of checked genes

Potri.019G034000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.