Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64770 417 / 3e-146 PnsB2, NDH45, NDF2 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) AT1G55370 100 / 2e-23 NDF5 NDH-dependent cyclic electron flow 5 (.1.2) AT5G57330 45 / 3e-05 Galactose mutarotase-like superfamily protein (.1) AT5G14500 41 / 0.001 aldose 1-epimerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034000 [exp] 136 / 2e-36 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2) Potri.013G058601 [exp] 123 / 5e-35 AT1G64770 79 / 3e-19 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Potri.018G089800 [exp] 44 / 9e-05 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 44 / 0.0001 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 43 / 0.0002 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 43 / 0.0002 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 42 / 0.0003 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010671 [exp] 485 / 7e-173 AT1G64770 413 / 1e-144 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Lus10007429 [exp] 478 / 9e-170 AT1G64770 408 / 2e-142 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Lus10002626 [exp] 130 / 1e-34 AT1G55370 234 / 4e-74 NDH-dependent cyclic electron flow 5 (.1.2) Lus10020267 [exp] 120 / 6e-31 AT1G55370 234 / 2e-74 NDH-dependent cyclic electron flow 5 (.1.2) Lus10026106 [exp] 42 / 0.0007 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 42 / 0.0008 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G034100.1 pacid=42774561 polypeptide=Potri.019G034100.1.p locus=Potri.019G034100 ID=Potri.019G034100.1.v4.1 annot-version=v4.1 ATGGCTTCTCTTCTTTCCTTCTCTCTTCGAAAACCAAGCATTATAAAAGCTACTTCATTATCTCCAACAACTACCAGCCCTTCAACTCCAGAGGTTCTTG AAGAAAAGTTTGGTAGAAAAGGCATCAAATTCTTGGAATCCAACAATGTTCCAACTGTTGAGCTAAAAGTTAGAAATGGCAGCTCTGTGAGGGTCCAGAT ACCTAATGCTTATGTCAGTTCTTACAAGCCAAAAGTTTATTGGAAGGATGATGGCTTTGAGGAGGTTCTTTATACCCTTCCTGGTAAGGAAAAGGATTCT TCTGGTATAGCTAAAGGCGGAATTGGTTTGGTCATCAATGATGCCTCTGAAGGTGGTTCCAAAGGGTCACTCATTTCTTCTTCTGAATGGACTGTAAAGG ATGTTGACTCTGATTCCATTGATGCTGTTCAGGTTGAATTGAGCTGCAGCAGTGGACCTCTTGAAATATCATATGTAGTCTCCCTTTATCCACTGAGCAT GGCATCAGCAGTGATAGTAAAGAATAATGGTCGCAAGGATGTGACTCTAACTAGTGCTATACTTAGTCATCTCAAATTCAAAAAGCGAGCAAAGGCAGGG ATCCAAGGACTGAGGAAATGTTATTACTGCACACAGCCTCCTTTATCTTCACCTTTCGAAGTTTTATCTCCATCGGAAGCATTGAAACCGGAGTCTCCGG GATTGCTTGATTTTGATTTTGAGCCCGAAGAGAAACCAGGATCATGGAAAGTGCAAGAGGAGCCCTACATAATTTTGAAGGATAGGCTTAGTAGAGTTTA TGCTGCTCCACCGCAAGAGAGGTTAAAAGCATTCTATAACACCTCACCTACAAAATATGAAACGCTTGATCAGGGAAAAGAGCTGTTCTTTAGGGTAATA CGGATTGGTTTCGAAGATATCTACATTGGCAGCCCGGGCTCGTTTGCAGAAAAGTATGGCAAGGACTATTTTATCTGCACTGGCCCTGCTGCAATGCTGG TTCCTGTCGTTGTGAAACCTGGTGAAGAATGGAAGGGGGCACAGATGATTGAGCATGATAATTTGTAA
AA sequence Show only first row Show all	>Potri.019G034100.1 pacid=42774561 polypeptide=Potri.019G034100.1.p locus=Potri.019G034100 ID=Potri.019G034100.1.v4.1 annot-version=v4.1 MASLLSFSLRKPSIIKATSLSPTTTSPSTPEVLEEKFGRKGIKFLESNNVPTVELKVRNGSSVRVQIPNAYVSSYKPKVYWKDDGFEEVLYTLPGKEKDS SGIAKGGIGLVINDASEGGSKGSLISSSEWTVKDVDSDSIDAVQVELSCSSGPLEISYVVSLYPLSMASAVIVKNNGRKDVTLTSAILSHLKFKKRAKAG IQGLRKCYYCTQPPLSSPFEVLSPSEALKPESPGLLDFDFEPEEKPGSWKVQEEPYIILKDRLSRVYAAPPQERLKAFYNTSPTKYETLDQGKELFFRVI RIGFEDIYIGSPGSFAEKYGKDYFICTGPAAMLVPVVVKPGEEWKGAQMIEHDNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Potri.019G034100 [exp]	0	1
					Potri.011G080900 [exp]	1.41	0.9811
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.014G106400 [exp]	3.16	0.9794	TMP14.2
AT3G15110			unknown protein		Potri.011G097800 [exp]	3.46	0.9754
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G025100 [exp]	5.91	0.9641
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.008G010400 [exp]	6.00	0.9656
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Potri.006G254500 [exp]	6.92	0.9714
AT1G51110			Plastid-lipid associated prote...		Potri.001G011700 [exp]	9.21	0.9661
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Potri.012G048300 [exp]	10.09	0.9580
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	16.12	0.9594
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.006G127200 [exp]	18.49	0.9572	RBP29.2

Compare expression of checked genes

Potri.019G034100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.