Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13460 412 / 5e-137 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT5G61020 367 / 9e-122 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT1G55500 368 / 3e-121 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G03950 353 / 2e-117 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3) AT3G13060 297 / 5e-93 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT3G17330 285 / 9e-90 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G48110 280 / 2e-86 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G79270 265 / 9e-82 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT1G27960 258 / 5e-79 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT1G09810 249 / 2e-76 ECT11 evolutionarily conserved C-terminal region 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222700 [exp] 415 / 7e-139 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.001G002000 [exp] 413 / 4e-138 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.014G001000 [exp] 302 / 1e-94 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.008G100200 [exp] 295 / 3e-91 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.007G002800 [exp] 291 / 2e-90 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 288 / 3e-90 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.006G079900 [exp] 288 / 2e-89 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.008G080800 [exp] 286 / 3e-89 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.018G149800 [exp] 285 / 4e-88 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020269 [exp] 462 / 1e-155 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10002624 [exp] 454 / 3e-154 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10033335 [exp] 306 / 5e-96 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10034792 [exp] 302 / 8e-95 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 288 / 1e-89 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10017111 [exp] 277 / 1e-84 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10037364 [exp] 270 / 5e-83 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10018343 [exp] 268 / 1e-81 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10015778 [exp] 255 / 6e-80 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037028 [exp] 261 / 2e-79 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G034300.2 pacid=42773006 polypeptide=Potri.019G034300.2.p locus=Potri.019G034300 ID=Potri.019G034300.2.v4.1 annot-version=v4.1 ATGGCAGCTGTTCCTTCTGCTACTGACAAAGCTGCAGGTTTGCTAGAGAACTTGTCATTAGATTCTCAGACCAAGACTGCTGGAAATCCTGCACCTGCTA CGAAGGATTTCTATGGCGATAATGGAAACTTCATTTATAACCAAGGCTATGGTTATGCGCCTTTTGGAACATATCTGCCTCCAAATTCACCCATTCCTAC CATGGGATATGATGGCCAGCTATATGGGGCACAGCAGCAGTACCAGTATCCTGGTTCTTTTTACCAGCCGTCAACTTCTGCAGGCTTGTTCTACCCCTCT AACCAGCCCAATCACTCTCAAGGGCATGTAGCATCCTCAGGTACAGCTGACAAAGTACCTTTTTCTGCTGGTACTGCTACAAGAAACTCCAATAACAAAG TGAATGCTGGAAGTGTAAATAGAAGCAACGGACCAGCAGCTGGTGCAGGGTTCTCATCAACACTGAACACTCATCCTACAAGACCAATATCTGGCATGGA CCAAGCATCTGGGTACATGAACTTGATGAATCCAAACAACAGGATGTATGGTCAATATGGAAACAGGATGTATGGTCAATATGGAAGCAGAGCTGGTGCT GATTTTGGATCTTATGCCTATAACTCATGGACAAATGGACGTGGGTGGGTGGTTGTTGATAACAAGTACAAATCCAGGGGCCATGGCTATGGAAATGAGA ACCGGGATGGTTTGAATGAGCTAAATAGAGGACCGAGGGCCAAGAGTTTCAGGAACCACAAGGAATTTGGAGCTGTCACACAAACAGCAGAGGGGCAGAA CCTCCCATTGTCCGAGAGTAATAGGGATGAGAATTTGCTCCAAATTCCAGACAGGGAACAGTACAATAAGGAAGACTTTCCTGAAGAATACTCAGATGCA AAGTTCTTTGTTATTAAATCATTCAGTGAGGATGATGTCCACAAGAGCATCAAATATAGTGTGTGGACAAGCACGCCTAACGGGAATAAGAAGCTGGATG CTGCATATAAACAGGGCAAAGAGAATCCTGGTGACTGTCCTGTATTTCTGTTATTCTCAGTCAACACCAGTGGGCAATTTGTTGGTTTGGCAGAGATGGT GGGGCCTGTTGATTTTAACAAAACTGTTGAGTACTGGCAGCAGGACAAGTGGACCGGTTGCTTTCCTTTAAAGTGGCATATTATTAAGGATGTTCCAAAT GGTTGTTTGAGGCATATTACACTTGAAAACAATGAAAACAAGCCTGTGACCAATAGTAGGGATACCCAAGAGGTTATCTTTGAGAAGGGTGTTCAAATTC TTAAAATATTCAAGGATCACAAGGGAAAGACATCAATCCTGGATGATTTTAGTTTTTATGCAGGTCGTGAAAGAATCATGCAGGAAAAAAGGGCCAAGCA CAATATTCACAAGCAGATTTCAGAGGGGAAGTCTGCTGCGATTGGGAAAGAGAGTTTGCAAACAGATGCAGCCTCCATAAAGGAACCAGCTGGTGCTACA CCACTTGAATCTGTGAAGATGAATGGAGAGGTAAACGGGAAAGAAGAGAATGGATCAGATTTAACTGTTGAAAACTCTGGCAGGGATGCTACATCCGCTG TATCATCTGAAAACGTTGCTCCAAATGTGGTTGCAAGTGCCTGCTAA
AA sequence Show only first row Show all	>Potri.019G034300.2 pacid=42773006 polypeptide=Potri.019G034300.2.p locus=Potri.019G034300 ID=Potri.019G034300.2.v4.1 annot-version=v4.1 MAAVPSATDKAAGLLENLSLDSQTKTAGNPAPATKDFYGDNGNFIYNQGYGYAPFGTYLPPNSPIPTMGYDGQLYGAQQQYQYPGSFYQPSTSAGLFYPS NQPNHSQGHVASSGTADKVPFSAGTATRNSNNKVNAGSVNRSNGPAAGAGFSSTLNTHPTRPISGMDQASGYMNLMNPNNRMYGQYGNRMYGQYGSRAGA DFGSYAYNSWTNGRGWVVVDNKYKSRGHGYGNENRDGLNELNRGPRAKSFRNHKEFGAVTQTAEGQNLPLSESNRDENLLQIPDREQYNKEDFPEEYSDA KFFVIKSFSEDDVHKSIKYSVWTSTPNGNKKLDAAYKQGKENPGDCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQDKWTGCFPLKWHIIKDVPN GCLRHITLENNENKPVTNSRDTQEVIFEKGVQILKIFKDHKGKTSILDDFSFYAGRERIMQEKRAKHNIHKQISEGKSAAIGKESLQTDAASIKEPAGAT PLESVKMNGEVNGKEENGSDLTVENSGRDATSAVSSENVAPNVVASAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.019G034300 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Potri.001G035000 [exp]	1.41	0.9291
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.004G055400 [exp]	3.16	0.8839
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Potri.005G083100 [exp]	3.46	0.8931
AT3G54826			Zim17-type zinc finger protein...		Potri.008G037300 [exp]	4.24	0.9074
AT5G40570			Surfeit locus protein 2 (SURF2...		Potri.001G342400 [exp]	5.83	0.8719
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.006G253100 [exp]	7.48	0.8779
AT1G64600			methyltransferases;copper ion ...		Potri.001G086800 [exp]	7.93	0.8698
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.019G133101 [exp]	8.00	0.8915
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Potri.012G092800 [exp]	8.36	0.8742
AT1G08410			P-loop containing nucleoside t...		Potri.009G017000 [exp]	10.39	0.8477

Compare expression of checked genes

Potri.019G034300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.