Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18200 413 / 8e-145 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233200 [exp] 523 / 0 AT5G18200 466 / 1e-165 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016535 [exp] 384 / 6e-134 AT5G18200 434 / 1e-153 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1) Lus10040803 [exp] 329 / 8e-113 AT5G18200 363 / 2e-126 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0265 [poplar] [flax] HIT PF01087 [poplar] [flax] GalP_UDP_transf Galactose-1-phosphate uridyl transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G034400.1 pacid=42773238 polypeptide=Potri.019G034400.1.p locus=Potri.019G034400 ID=Potri.019G034400.1.v4.1 annot-version=v4.1 ATGTCATCTCAAGGTCAAAATACGGGTCGGAGGCCCGAGCTCAGGCACGACCCGGTAACAAACCGATGGGTCATTTTCTCACCCGCCCGTGCCAAAAGAC CCACTGATCTCAAATCCAAATCCCCTCAAAACTCTAACCCCAACGACAACTCCTCATGCCCTTTCTGCATCGGCAACGAGCACGAGTGCGCACCCGAAAT CTTCCGGGTCCCGTCCGACCCGAATTGGAAACTCCGGGTCATTGAGAATCTCTACCCCGCCCTGAACAGGAATCTCGAGGGCCCGTGTGATGAAAAGCAG GATATGGGTGTTCCGGGTCTGGCAATGGGTGGTTTTGGGTTTCACGATGTGGTGATAGAGAACCCGGTTCATTCGGTCCATCTGTGTGATATGGAGGCGA GAGATATTGGCCAAGTTTTGCTTGCTTATAAGAAGAGGATTCAGCAGATTGCTACTGTTGAATCCATTAAATACGTGCAGGTGTTCAAGAACCATGGCGC ATCTGCTGGAGCATCGATGAGTCATTCACATAGCCAGATACTGGCTCTTCCCATTATTCCTTCATCAGTTTCTGCTCGATTTGAGGGCATGAATGAGTAC TTTGAAAAGACAGGAAAATGCAGTCTATGTGAAGTTCAAGCAAAAGAACTTTTGATTGATGAATCGACTCATTTTATCTCCATTGTTCCTTTTGCTGCCA CATTCCCTTTTGAGATATGGATTATTCCCAGGGCTCACTCCTCTCATTTCCATGAATTTGATTGTGAGAAGATGGTTGATCTCGGTGGATTGCTGAAGCT CATGCTTAGGAAGATGTCTCTACAACTGAACAACCCACCATTTAACTTCATGATCCAGACCTCTCCCCTTCAGGTTAAAGAATCAGAATTATTCTATTCT CACTGGTTTTTACAGATAATACCTCAGTTGAGTGGGGTCGGGGGGTTTGAAATTGGAACTGGTTGCTACATAAATCCTGTTTTCCCCGAGGATGCTGCAA AGGTTATGAGGGAAGTTAATCTGCCAGTGGAGGGTTGA
AA sequence Show only first row Show all	>Potri.019G034400.1 pacid=42773238 polypeptide=Potri.019G034400.1.p locus=Potri.019G034400 ID=Potri.019G034400.1.v4.1 annot-version=v4.1 MSSQGQNTGRRPELRHDPVTNRWVIFSPARAKRPTDLKSKSPQNSNPNDNSSCPFCIGNEHECAPEIFRVPSDPNWKLRVIENLYPALNRNLEGPCDEKQ DMGVPGLAMGGFGFHDVVIENPVHSVHLCDMEARDIGQVLLAYKKRIQQIATVESIKYVQVFKNHGASAGASMSHSHSQILALPIIPSSVSARFEGMNEY FEKTGKCSLCEVQAKELLIDESTHFISIVPFAATFPFEIWIIPRAHSSHFHEFDCEKMVDLGGLLKLMLRKMSLQLNNPPFNFMIQTSPLQVKESELFYS HWFLQIIPQLSGVGGFEIGTGCYINPVFPEDAAKVMREVNLPVEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18200			UTP:galactose-1-phosphate urid...		Potri.019G034400 [exp]	0	1
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Potri.007G127500 [exp]	1.00	0.8684	FTA.1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.001G236900 [exp]	6.00	0.8125
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	6.32	0.8191	MBD5.2,MBD904
AT5G46720			AIG2-like (avirulence induced ...		Potri.003G092600 [exp]	7.74	0.8381
AT2G10950			BSD domain-containing protein ...		Potri.006G065200 [exp]	8.94	0.8147
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Potri.001G258000 [exp]	10.53	0.8329
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	10.58	0.7846
AT5G40190			RNA ligase/cyclic nucleotide p...		Potri.001G350300 [exp]	15.49	0.8087
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Potri.001G400000 [exp]	15.87	0.8006	ATCOX17.2
AT4G29960			unknown protein		Potri.018G143000 [exp]	18.46	0.8094

Compare expression of checked genes

Potri.019G034400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.