Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03940 1207 / 0 Protein kinase family protein (.1) AT5G18190 1158 / 0 Protein kinase family protein (.1) AT3G13670 984 / 0 Protein kinase family protein (.1) AT2G25760 951 / 0 Protein kinase family protein (.1.2) AT3G03930 372 / 2e-124 protein kinase-related (.1) AT4G26100 197 / 7e-56 CKL1, CK1 casein kinase 1 (.1) AT4G28860 195 / 1e-55 CKL4 casein kinase I-like 4 (.1.2) AT3G23340 195 / 4e-55 CKL10 casein kinase I-like 10 (.1) AT1G03930 196 / 5e-55 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT1G72710 195 / 6e-55 CKL2 casein kinase 1-like protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009700 [exp] 1001 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 988 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 969 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 967 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 920 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 906 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.018G065900 [exp] 199 / 2e-56 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 198 / 2e-56 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1) Potri.001G197600 [exp] 199 / 3e-56 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039203 [exp] 996 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 994 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10024261 [exp] 957 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 951 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 949 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10026214 [exp] 941 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10011091 [exp] 936 / 0 AT5G18190 970 / 0.0 Protein kinase family protein (.1) Lus10025827 [exp] 932 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 900 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 899 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.019G034500.2 pacid=42773518 polypeptide=Potri.019G034500.2.p locus=Potri.019G034500 ID=Potri.019G034500.2.v4.1 annot-version=v4.1 ATGCCAGAATTGAGAAGTGGAGCCCGGAGATCAAAGCGCCTTGATGATCTTCAGCCTCCCCAACAACCAAACAATCAAGCAGAAAATTTGACGGTGCCTG TTCAAAACAAGACCAGGAGGAGAGCTGGTGGTGGTAGAGGAAGGGGTGGGAATGCTGCAGGTGTAGCAAAAGGGGCTTCGCCAACAACGAGGCCAACTGC TGCCGGTAGAGGCCGGGGTGTTAGGTTGATAGATTTAGACCCAGAACCTTGTCAGGTTGAACCTGCAGCTGTTGGAGCTGCTGAACTAGGTTATAATAGA TTAGAGGTGGTGGCAGATAAAGATATCGCGATGGAGGGTGGAAGTGCAGAAAAGGTAGTGGCAGTCGAAGAAGAAGGAAGCACTACTCCAGTTCCTGAGA GGGTGCAAGTGGGTAGTTCTCCTGTGTACAAAGTAGAAAGGAAGTTGGGTAAGGGTGGTTTTGGCCAAGTTTATGTTGGCAGAAGAGTTAGTGGAGGCAG TGATAGAACTGGACCAGATGCAATTGAGGTGGCACTAAAGTTTGAGCACAGAAATAGTAAAGGTTGCAATTATGGCCCTCCTTATGAGTGGCAAGTGTAC AACACCTTAAATGGATGTTATGGAATTCCTTGGGTACATTACAAGGGTCGTCAAGGAGACTTCTATATTCTGGTAATGGACATGCTTGGTCCCAGTCTTT GGGATGTTTGGAATTCCCTTGGCCAATCGATGTCACCAAATATGGCAGCCTGCATTGCTGTGGAGGCTATATCAATTCTTGAAAAGCTTCACATGAAGGG GTTTGTGCATGGAGATGTCAAACCCGAAAACTTTTTACTTGGTCAACCTGGAACCGCAGAAGAGAAAAAGCTATATCTTATTGATCTTGGTTTGGCTTCT AGATGGAAAGATGCTTCCTCTGGTCAGCATGTTGATTATGATCAGAGGCCTGATGTATTCAGGGGAACGATAAGGTATGCAAGTGTACATGCACATTTAG GTCGGACTGGAAGTCGGAGGGATGATCTTGAGTCATTAGCATATACATTAATATTTCTTATAAAAGGAAGGTTGCCATGGCAGGGTTATCAGGGAGATAA CAAGAGCTTTCTTGTTTGTAAGAAAAAGATGGGTACATCTCCAGAGCTGATGTGTTGTTTTTGTCCTGCCCCATTCAAACAATTGCTTGAAGCTGTTACA AATATGAAGTTTGATGAGGAGCCCAATTATTCCAAGCTGATATCTTTCTTTGAAAGTCTTATTGAGCCATGCACTCCACTAAGGCCAATTAGAATTGACG GAGCTCTTAAGGTTGGACAGGTTGGACAAAAACGCGGAAGATTGCTTATAAACTTGGAAGAGGATGAGCAACCAAAAAAGAAAGTACGATTAGGGAGTCC TGCTACACAGTGGATTTCTGTTTACAATGCACGCCGACCTATGAAGCAGAGATACCACTACAATGTAGCTGATTCAAGGCTGCGCCAGCATGTAGAAAAG GGTAATGAAGATGGATTATATATCAGCTGTGTTGCCTCTTCAACTAATCTCTGGGCCTTAATCATGGATGCTGGAACGGGCTTCACATCTCAGGTTTATG AATTGTCAACTGTCTTCCTGCACAAGGATTGGATTATGGAACAGTGGGAAAAAAATTACTATATCAGTTCAATAGCTGGTGCAAGTAATGGAAGTTCGTT GGTTGTTATGTCCAAAGGAACTCCTTACACCCAGCAGTCTTACAAAGTGAGTGAATCTTTTCCTTTCAAGTGGATAAATAAAAAGTGGAAAGAAGGTTTT CATGTCACATCCATGACAACTGCTGGCAGTCGCTGGGGTGTGGTTATGTCCAGGAATGCTGGATATTCTGATCAGGTTGTGGAGCTTGACTTTTTGTATC CAAGCGAAGGGATCCATCGGCGATGGGAGAGTGGTTTCAGGATAACATCTATGGCTGCCACTGCTGATCAAGCAGCCTTCATATTGAGCATACCAAAACG AAAAATGGTGGATGAAACTCAGGAAACCCTGCGCACCTCTGCCTTCCCAAGCACCCATGTTAAGGAAAAATGGTCCAAAAATCTCTACATTGCTTCAATC TGCTACGGGCGCACTGTTTGCTAG
AA sequence Show only first row Show all	>Potri.019G034500.2 pacid=42773518 polypeptide=Potri.019G034500.2.p locus=Potri.019G034500 ID=Potri.019G034500.2.v4.1 annot-version=v4.1 MPELRSGARRSKRLDDLQPPQQPNNQAENLTVPVQNKTRRRAGGGRGRGGNAAGVAKGASPTTRPTAAGRGRGVRLIDLDPEPCQVEPAAVGAAELGYNR LEVVADKDIAMEGGSAEKVVAVEEEGSTTPVPERVQVGSSPVYKVERKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVY NTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPNMAACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTAEEKKLYLIDLGLAS RWKDASSGQHVDYDQRPDVFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMGTSPELMCCFCPAPFKQLLEAVT NMKFDEEPNYSKLISFFESLIEPCTPLRPIRIDGALKVGQVGQKRGRLLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADSRLRQHVEK GNEDGLYISCVASSTNLWALIMDAGTGFTSQVYELSTVFLHKDWIMEQWEKNYYISSIAGASNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGF HVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGFRITSMAATADQAAFILSIPKRKMVDETQETLRTSAFPSTHVKEKWSKNLYIASI CYGRTVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	0	1
AT2G16460			Protein of unknown function (D...		Potri.007G016300 [exp]	6.00	0.6495
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	8.12	0.6725	ATHMG.2
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.009G163400 [exp]	9.00	0.7077
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Potri.016G059900 [exp]	9.48	0.5682	TUBGCP6,Pt-SPC98.1
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.013G020400 [exp]	16.73	0.5755	SNF4.4
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	20.34	0.5916
AT5G08560			transducin family protein / WD...		Potri.005G206600 [exp]	29.39	0.5601
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Potri.003G097700 [exp]	30.88	0.6394
AT1G15280			CASC3/Barentsz eIF4AIII bindin...		Potri.003G056500 [exp]	31.14	0.6516
AT1G68070			Zinc finger, C3HC4 type (RING ...		Potri.008G134900 [exp]	48.96	0.5969

Compare expression of checked genes

Potri.019G034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.