Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GDH1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18170 783 / 0 GDH1 glutamate dehydrogenase 1 (.1) AT3G03910 768 / 0 GDH3 glutamate dehydrogenase 3 (.1) AT5G07440 698 / 0 GDH2 glutamate dehydrogenase 2 (.1.2.3) AT1G51720 129 / 2e-32 Amino acid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058300 [exp] 815 / 0 AT5G18170 787 / 0.0 glutamate dehydrogenase 1 (.1) Potri.015G111000 [exp] 716 / 0 AT5G07440 773 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.012G113500 [exp] 710 / 0 AT5G07440 766 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.001G199600 [exp] 127 / 6e-32 AT1G51720 1033 / 0.0 Amino acid dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005697 [exp] 786 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10020288 [exp] 783 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10003858 [exp] 781 / 0 AT5G18170 782 / 0.0 glutamate dehydrogenase 1 (.1) Lus10032509 [exp] 696 / 0 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10043007 [exp] 575 / 0 AT5G07440 649 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10006872 [exp] 124 / 1e-30 AT1G51720 1019 / 0.0 Amino acid dehydrogenase family protein (.1) Lus10037612 [exp] 100 / 2e-22 AT1G51720 947 / 0.0 Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00208 [poplar] [flax] ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CL0603 [poplar] [flax] AA_dh_N PF02812 [poplar] [flax] ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.019G034800.14 pacid=42774612 polypeptide=Potri.019G034800.14.p locus=Potri.019G034800 ID=Potri.019G034800.14.v4.1 annot-version=v4.1 ATGAATGCATTAGTGGCAACCAACAGGAACTTCAAGCGGGCAGCTAAGCTGTTGGGGTTGGACTCCAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGAG AGATTAAGGTTGAATGTACCATACCCAAAGACGATGGCACTTTGGCGTCTTTTGTTGGGTTCAGGGTTCAGCATGACAATGCCAGAGGTCCCATGAAAGG GGGGATCAGATACCACCCAGAGGTTGATCCAGATGAAGTCAATGCATTAGCACAACTTATGACATGGAAAACAGCAGTAGCGAACATTCCCTATGGTGGG GCTAAAGGTGGAATAGGGTGTAATCCAGGGGAGTTAAGTGTGTCTGAACTGGAACGACTTACCCGTGTGTTCACTCAAAAGATACATGATCTAATCGGAA TCCACACAGACGTTCCAGCTCCTGATATGGGAACTGGTCCACAGACTATGGCATGGATACTGGATGAATACTCCAAGTTTCATGGCTACTCACCTGCTGT TGTTACTGGAAAACCAATTGATCTCGGTGGATCTCTAGGCAGAGATGCCGCCACTGGACGAGGAGTGCTCTTCGCTACAGAAGCCTTGCTTAAGGAGCAC GGGAAGACCATATCAGGGCAACGATTCGTCATACAGGGTTTTGGAAATGTGGGTGCCTGGGCCGCCCAACTAATCAGTGAGCAGGGAGGGAAGATCGTTG CCGTAAGTGACATCACTGGAGCTATAAAGAACAACAAAGGGCTTGATATTCCAAGCCTACTCAAACATGCCAATGAACACAAAGGTGTGAAAGGATTCCA TGGCGGGGATCCGATCGATCCCAAATCAATACTAGTTGAGGACTGTGACATTCTCATTCCAGCAGCCCTTGGAGGTGTCATCAACAGGGAGAATGCAAGT GATATTAAATCCAAATTTATTATTGAAGCTGCCAACCATCCAACTGATCCTGAGGCTGACGAGATTTTGACAAAGAAAGGTGTTGTTATTCTTCCAGATA TATTTGCTAACTCAGGAGGAGTCACTGTTAGCTACTTTGAGTGGGTTCAGAACATCCAAGGATTCATGTGGGATGAAGAGAAGGTGAACAATGAACTAAA GAATTACATGACCAGAGGTTTCAAAGATGTGAAAGAGATGTGCAAAACCCACAACTGTGATCTGCGTATGGGAGCCTTCACTCTAGGTGTTAACCGCGTT GCACGAGCTACCGTTCTGAGAGGTTGGGGAGCCTGA
AA sequence Show only first row Show all	>Potri.019G034800.14 pacid=42774612 polypeptide=Potri.019G034800.14.p locus=Potri.019G034800 ID=Potri.019G034800.14.v4.1 annot-version=v4.1 MNALVATNRNFKRAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG AKGGIGCNPGELSVSELERLTRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLKEH GKTISGQRFVIQGFGNVGAWAAQLISEQGGKIVAVSDITGAIKNNKGLDIPSLLKHANEHKGVKGFHGGDPIDPKSILVEDCDILIPAALGGVINRENAS DIKSKFIIEAANHPTDPEADEILTKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKNYMTRGFKDVKEMCKTHNCDLRMGAFTLGVNRV ARATVLRGWGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.019G034800 [exp]	0	1	Pt-GDH1.1
AT3G08640			Protein of unknown function (D...		Potri.006G111300 [exp]	1.73	0.7491
AT2G01430	HD	ATHB17, ATHB-17	ARABIDOPSIS THALIANA HOMEOBOX-...		Potri.010G112600 [exp]	6.70	0.7106
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.011G148600 [exp]	6.92	0.7089
AT1G21890			nodulin MtN21 /EamA-like trans...		Potri.002G085100 [exp]	10.39	0.7270
AT2G28780			unknown protein		Potri.001G237300 [exp]	10.58	0.7046
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G085000 [exp]	10.86	0.7371
AT1G54460			TPX2 (targeting protein for Xk...		Potri.013G042800 [exp]	17.60	0.6915
AT2G15220			Plant basic secretory protein ...		Potri.001G299400 [exp]	18.73	0.6894
					Potri.015G010500 [exp]	18.97	0.6409
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120700 [exp]	19.89	0.6772

Compare expression of checked genes

Potri.019G034800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.