Plant FIBer expression Database

Potri.019G034900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03920 181 / 7e-58 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
AT5G18180 170 / 7e-54 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G058400
[exp]
201 / 4e-66 AT3G03920 181 / 7e-58 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020289
[exp]
185 / 1e-59 AT3G03920 196 / 7e-64 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF04410 Gar1 Gar1/Naf1 RNA binding region
Representative CDS sequence
>Potri.019G034900.1 pacid=42774377 polypeptide=Potri.019G034900.1.p locus=Potri.019G034900 ID=Potri.019G034900.1.v4.1 annot-version=v4.1
ATGAGGCCACCAAGAGGCGGCGGATTTAGAGGAGGGAGAGACGGCGGATTTAGAGGAGGGAGAGACGGCGGTTTCAGGGGTGGACGTGGTGGACGCGGTG
GTCCTGGCCGTGGTGGACGTGGTTTTGGTGGTGGTGGGTTTCGTGATGAAGGCCCTCCTTCTGAAGTAGTAGAGGTCTCATCGTTTCTTCATGCCTGTGA
GGGTGATGCAGTGACAAAGCTAACCAATGAGAAAATACCATACTTCAATGCACCAATATTTTTGCAGAATAAGACCCAGATAGGGAAAGTTGATGAAATC
TTTGGCCCCATTAATGAATCTCATTTTTCTATAAAAATGATGGAAGGAATTGTGGCAACTTCGTATGCACCAGGGGAGAAGTTCTATATTGACCCGAATA
AACTCCTGCCTCTTGCAAGATTCCTTTCACAGCCTAAGGGACAGGCACAAGCAGCTGGAAGAGGTGGCCGTGGTGGTGGAAGAGGAGGCAGAGGTGGTAG
AGGCGGTTTCAGCGGAAGGGGAAGGGGCAGAGGTCCACCTAGAGGTGGTGGTTTTGGTCGTGGTGGTTTTAGGGGGAGAGGGAGAGGATAG
AA sequence
>Potri.019G034900.1 pacid=42774377 polypeptide=Potri.019G034900.1.p locus=Potri.019G034900 ID=Potri.019G034900.1.v4.1 annot-version=v4.1
MRPPRGGGFRGGRDGGFRGGRDGGFRGGRGGRGGPGRGGRGFGGGGFRDEGPPSEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIFLQNKTQIGKVDEI
FGPINESHFSIKMMEGIVATSYAPGEKFYIDPNKLLPLARFLSQPKGQAQAAGRGGRGGGRGGRGGRGGFSGRGRGRGPPRGGGFGRGGFRGRGRG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G03920 H/ACA ribonucleoprotein comple... Potri.019G034900
[exp]
0 1
AT5G67240 SDN3 small RNA degrading nuclease 3... Potri.007G048000
[exp]
1.00 0.8509
AT1G76010 Alba DNA/RNA-binding protein (... Potri.002G017600
[exp]
3.31 0.8163
AT5G57120 unknown protein Potri.018G140200
[exp]
3.87 0.8439
AT3G49180 RID3 ROOT INITIATION DEFECTIVE 3, T... Potri.014G027200
[exp]
4.89 0.8423
AT3G12860 NOP56-like pre RNA processing ... Potri.015G092900
[exp]
5.83 0.8446 NOP56.1
AT2G44860 Ribosomal protein L24e family ... Potri.009G148500
[exp]
6.32 0.8335
AT4G21130 EMB2271 EMBRYO DEFECTIVE 2271, Transdu... Potri.007G107900
[exp]
6.70 0.8402
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Potri.016G041200
[exp]
10.81 0.8231 Pt-NAP57.1
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.004G169500
[exp]
13.56 0.7857
AT5G62440 Protein of unknown function (D... Potri.013G022500
[exp]
16.97 0.8162

Potri.019G034900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.