Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18150 110 / 3e-33 Methyltransferase-related protein (.1) AT5G14602 99 / 9e-29 unknown protein AT5G58375 66 / 6e-16 Methyltransferase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058200 [exp] 162 / 5e-54 AT5G18150 114 / 5e-35 Methyltransferase-related protein (.1) Potri.013G155800 [exp] 66 / 1e-15 AT5G58375 67 / 5e-16 Methyltransferase-related protein (.1) Potri.019G127900 [exp] 58 / 2e-12 AT5G58375 64 / 6e-15 Methyltransferase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020287 [exp] 117 / 8e-36 AT5G18150 109 / 4e-33 Methyltransferase-related protein (.1) Lus10005698 [exp] 116 / 2e-35 AT5G18150 108 / 1e-32 Methyltransferase-related protein (.1) Lus10034423 [exp] 83 / 2e-22 AT5G18150 87 / 5e-24 Methyltransferase-related protein (.1) Lus10019138 [exp] 77 / 6e-20 AT5G18150 80 / 3e-21 Methyltransferase-related protein (.1) Lus10042227 [exp] 65 / 2e-15 AT5G58375 91 / 2e-25 Methyltransferase-related protein (.1) Lus10008585 [exp] 64 / 6e-15 AT5G58375 89 / 1e-24 Methyltransferase-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G035000.1 pacid=42774640 polypeptide=Potri.019G035000.1.p locus=Potri.019G035000 ID=Potri.019G035000.1.v4.1 annot-version=v4.1 ATGTGTCCTTTCAGGTTTATCTTGGTGTTTTTGTCAGCAGTTTTGGCTGGATATTTTGCATGGAAGACAGTGCGATCGTCGCCAGAGATTGACGACATGG TTTCCGATGATTCAACGGCTGAAAAGACTTCATTGGAAGATAAACAAGAATTCAATTCGAAAAGGATGATTCAAAATGGATTCTGGGTATTTGTCGACAT GGCCAGTGGGAGCTACTTGTGGAGGAATTTGAAGGAGATGAAGAAAGATGCGACCTTGAAAAGCTCGTAA
AA sequence Show only first row Show all	>Potri.019G035000.1 pacid=42774640 polypeptide=Potri.019G035000.1.p locus=Potri.019G035000 ID=Potri.019G035000.1.v4.1 annot-version=v4.1 MCPFRFILVFLSAVLAGYFAWKTVRSSPEIDDMVSDDSTAEKTSLEDKQEFNSKRMIQNGFWVFVDMASGSYLWRNLKEMKKDATLKSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18150			Methyltransferase-related prot...		Potri.019G035000 [exp]	0	1
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	1.41	0.8581
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	1.73	0.8637
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220700 [exp]	5.19	0.8505
AT1G49850			RING/U-box superfamily protein...		Potri.009G091200 [exp]	5.47	0.8424
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	5.47	0.8252	Pt-ACA1.1
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Potri.009G168600 [exp]	7.48	0.8482	CDPK3.2
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.011G131700 [exp]	8.30	0.7938
					Potri.017G077100 [exp]	8.94	0.8292
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220400 [exp]	10.00	0.8470
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.014G052500 [exp]	11.31	0.7763

Compare expression of checked genes

Potri.019G035000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.