Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18140 225 / 3e-71 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 73 / 5e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 73 / 6e-14 DNAJ heat shock family protein (.1) AT1G80030 72 / 1e-13 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 69 / 9e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G59610 66 / 4e-12 Chaperone DnaJ-domain superfamily protein (.1.2) AT5G05750 61 / 2e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G41000 60 / 2e-10 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G61770 60 / 7e-10 Chaperone DnaJ-domain superfamily protein (.1) AT3G57340 59 / 1e-09 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058100 [exp] 355 / 4e-122 AT5G18140 264 / 1e-86 Chaperone DnaJ-domain superfamily protein (.1) Potri.003G031800 [exp] 73 / 6e-14 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 71 / 2e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 69 / 2e-12 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.001G072700 [exp] 66 / 4e-12 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.015G035300 [exp] 65 / 2e-11 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.006G153700 [exp] 62 / 2e-10 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.005G160200 [exp] 61 / 4e-10 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.016G120000 [exp] 61 / 4e-10 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020286 [exp] 198 / 1e-60 AT5G18140 265 / 3e-87 Chaperone DnaJ-domain superfamily protein (.1) Lus10023122 [exp] 73 / 6e-14 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10023148 [exp] 72 / 1e-13 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10011484 [exp] 72 / 2e-13 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10000631 [exp] 71 / 2e-13 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10002355 [exp] 65 / 5e-12 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10016510 [exp] 66 / 7e-12 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10040777 [exp] 66 / 8e-12 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10020949 [exp] 66 / 9e-12 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10002356 [exp] 61 / 8e-11 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.019G035100.1 pacid=42774423 polypeptide=Potri.019G035100.1.p locus=Potri.019G035100 ID=Potri.019G035100.1.v4.1 annot-version=v4.1 ATGGAAGAAAAACAAGTGTCGCGCTCACTTGATGTCCTCTCTGCATGTGCATCATTTGAGAAACGAACGATAATGCAGGCGCACCTCTTCCTGGTGGGAC CCATCCCCGCCACAATTGACGCCTCTGCTTCCTCCTCCTCCAGCTCCATCAGCAGGGGTGGCCACAATTCCCCGACTCGTAGCTGGAGCCGACACCGTAA ATGTAGCAATAAATCCCACCATCACAAGAAAAACAACAAGCGGGGCCCAACAACAGTGGTAGTTGCATCATCATCATCATCATCATGGGCAGCATTCAAC GGCGGCGAGCAAGACCATTATGCGGTGCTGGGACTCGAACGCACCGCCACTTCAGCCGATATTAAGAAAGCTTATCGCCTTCTTGCTCGAAAGTATCATC CTGATGTTAGCAAGCATTCACAAGCTTGTGAGCTGTTCAAGAGTGTTCGGCATGCATATGAAATACTCTTTAATGAAGTGACAAGGGCTCGGTATGATCG AGTACTTAGATTTCAAGAAGATACTGGCAGGTCATATAGTAAAAGACACTATTATACTCCCGAAGTTGAAGACTGGGGAAGGATCTACAAATGGGCTGAA ATGAAGCGGAAAATGAGAAGTGGGGCACATTGGGAGCACTATAACGTGAGCGAGGACCCTTCCTTCTACAGTGACACAGAAGAGGAGGCTGAAGAAGGAA GCCTAGATCAGGAAAGAGGACCCTTTAGCGAAGTGCTAAGATCTGCATTTTTATCCCTCTTTTTACTGCAGACTCTTGGATCTCTATCATCTCTTACCTT CAGTAGTCTCATGGCTTTGTTCGACAGACAATTGGATGCTGGGTATAAGATTGGTTATTTCATTGCATGGATTTTGGGTGGGAGAGGTGGGATTCTGCTT GTTCTGTGTCTCCAATTTGCTAGCTGGGCCTGTGGAAAGACAAGCAGCAGTGTGGTTGCTCTGGTGGTGGTGGCCCTGTGTGTTGGTTCAAATCTTGCGA GGGTCGCTCCACTCCCACACGGTGCTCTTGTCACACTTTTGTACATGTCTATTAAGCTGCAAGCGGACCTAAACTGA
AA sequence Show only first row Show all	>Potri.019G035100.1 pacid=42774423 polypeptide=Potri.019G035100.1.p locus=Potri.019G035100 ID=Potri.019G035100.1.v4.1 annot-version=v4.1 MEEKQVSRSLDVLSACASFEKRTIMQAHLFLVGPIPATIDASASSSSSSISRGGHNSPTRSWSRHRKCSNKSHHHKKNNKRGPTTVVVASSSSSSWAAFN GGEQDHYAVLGLERTATSADIKKAYRLLARKYHPDVSKHSQACELFKSVRHAYEILFNEVTRARYDRVLRFQEDTGRSYSKRHYYTPEVEDWGRIYKWAE MKRKMRSGAHWEHYNVSEDPSFYSDTEEEAEEGSLDQERGPFSEVLRSAFLSLFLLQTLGSLSSLTFSSLMALFDRQLDAGYKIGYFIAWILGGRGGILL VLCLQFASWACGKTSSSVVALVVVALCVGSNLARVAPLPHGALVTLLYMSIKLQADLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.019G035100 [exp]	0	1
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.003G032200 [exp]	2.00	0.7652
AT4G35250			NAD(P)-binding Rossmann-fold s...		Potri.009G143000 [exp]	6.63	0.7578
					Potri.001G152550 [exp]	10.95	0.7380
AT2G01680			Ankyrin repeat family protein ...		Potri.008G134500 [exp]	13.41	0.7188
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080000 [exp]	13.85	0.7880
AT3G62650			unknown protein		Potri.014G124900 [exp]	17.43	0.6969
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G313000 [exp]	18.97	0.7301
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.004G127200 [exp]	19.44	0.7343
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Potri.006G161400 [exp]	21.90	0.6732
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.002G134000 [exp]	22.29	0.7305

Compare expression of checked genes

Potri.019G035100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.