Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18130 159 / 6e-47 unknown protein AT3G03870 133 / 3e-37 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G057200 [exp] 460 / 4e-165 AT5G18130 138 / 7e-39 unknown protein Potri.019G071300 [exp] 44 / 7e-05 AT4G10080 125 / 3e-33 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020284 [exp] 200 / 3e-63 AT5G18130 162 / 9e-49 unknown protein Lus10005702 [exp] 194 / 7e-61 AT5G18130 157 / 5e-47 unknown protein Lus10041074 [exp] 55 / 2e-08 AT4G13530 170 / 2e-50 unknown protein Lus10003531 [exp] 52 / 4e-07 AT4G13530 186 / 7e-55 unknown protein Lus10030342 [exp] 51 / 5e-07 AT4G13530 176 / 1e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G035600.2 pacid=42774252 polypeptide=Potri.019G035600.2.p locus=Potri.019G035600 ID=Potri.019G035600.2.v4.1 annot-version=v4.1 ATGGATCTTGAAGAGTGGGAGCTTCTACCCCATGATGGGTTCATTGATTACCATGAAGATGGTGAGAAGAAGACTTTTGGGGCAAGCAAACGTAGTGGTA GTCCTAATCCCAAAGCCATGTTCGACATGAACTACTTCATGTGCCCGTCTTCTCCACCAAAACATTCAAGGGTGGTTCCTAATCAACTTGTTCCAGTTCA TATTCAGTTGGAGCCACCAACAAAAACTAGCAAGGATGTCCCAGAAGATCATGTAATCTCCAAAAAAGATGTGGTCTCCATGGTACCTATCGACCTAAGC GCTGTGGTTCCCTCTGTGACCATGCCAGAAGTCAAAGAAGCTGATCAAGACTCAGTTTCTCAAGTTTTCTTCAAGAAAATGAAGGAAAATGAATTTGTCG ACATGAAATTGGACTCTCCAAAGTCCTCAAACACCAAGGGTGGTTTCGCACCCCCTCAAATTGATGCTGGTTCTACTTTTAACTTTGAAGACAAAAGTGA TCATCAGGGGTATACAGGTGATCAGGTCCTGGAGACCACCAAGATTAGTTCTCCAAGGATCAAGAGCACTGAAAACGAAAATAGTACAAAAAAGGAGGTG AACTGGGAGGAGAATAGCAGTGGCTTGAATTTATGGAAGTTGAGCTTAACTGGGATTGGCGCTATTTGCACTTTTGGTGTTGCAGCTGCTACCATCTGTA TTTTCATTTTTGGAAATCAGCAAAGAAACAAGCAGCAACAACAGAACCAAAAGCTGAGCTTCCAGATTTACACTGACGACAAGAGGATTAAGCAAGTGGT TCACCATGCAACAAAATTGAATGAAGCAATTTCAGCAGCCAGAGGAGTTCCTATCGCTAGAGCTCACATTACCTATGGCGGCTACTACAATGGTCTTTGA
AA sequence Show only first row Show all	>Potri.019G035600.2 pacid=42774252 polypeptide=Potri.019G035600.2.p locus=Potri.019G035600 ID=Potri.019G035600.2.v4.1 annot-version=v4.1 MDLEEWELLPHDGFIDYHEDGEKKTFGASKRSGSPNPKAMFDMNYFMCPSSPPKHSRVVPNQLVPVHIQLEPPTKTSKDVPEDHVISKKDVVSMVPIDLS AVVPSVTMPEVKEADQDSVSQVFFKKMKENEFVDMKLDSPKSSNTKGGFAPPQIDAGSTFNFEDKSDHQGYTGDQVLETTKISSPRIKSTENENSTKKEV NWEENSSGLNLWKLSLTGIGAICTFGVAAATICIFIFGNQQRNKQQQQNQKLSFQIYTDDKRIKQVVHHATKLNEAISAARGVPIARAHITYGGYYNGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18130			unknown protein		Potri.019G035600 [exp]	0	1
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.014G107200 [exp]	1.00	0.9623
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.009G139600 [exp]	2.00	0.9514
AT1G21000			PLATZ transcription factor fam...		Potri.005G259000 [exp]	2.82	0.9423
AT2G14830			Regulator of Vps4 activity in ...		Potri.013G135700 [exp]	3.87	0.9459
AT3G05970		LACS6, ATLACS6	long-chain acyl-CoA synthetase...		Potri.010G090200 [exp]	4.00	0.9289	Pt-LACS6.1
AT3G46540			ENTH/VHS family protein (.1)		Potri.001G239200 [exp]	4.89	0.9307
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	7.74	0.9188	PDS1.2
AT1G07040			unknown protein		Potri.008G194800 [exp]	8.06	0.9374
AT5G62680			Major facilitator superfamily ...		Potri.012G071400 [exp]	12.56	0.8792
AT2G16980			Major facilitator superfamily ...		Potri.004G178600 [exp]	12.96	0.9304

Compare expression of checked genes

Potri.019G035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.