Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18120 276 / 1e-92 ATAPRL7 APR-like 7 (.1) AT3G03860 274 / 1e-91 ATAPRL5 APR-like 5 (.1) AT1G34780 126 / 5e-34 ATAPRL4 APR-like 4 (.1.2) AT4G08930 118 / 3e-31 ATAPRL6 APR-like 6 (.1) AT2G32920 50 / 1e-06 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 49 / 2e-06 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G47470 48 / 2e-06 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G057100 [exp] 449 / 1e-160 AT5G18120 293 / 3e-99 APR-like 7 (.1) Potri.005G164200 [exp] 124 / 2e-33 AT1G34780 364 / 1e-126 APR-like 4 (.1.2) Potri.002G097601 [exp] 124 / 5e-33 AT1G34780 357 / 9e-124 APR-like 4 (.1.2) Potri.002G082100 [exp] 57 / 4e-09 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 52 / 2e-07 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.014G160000 [exp] 51 / 4e-07 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.002G198300 [exp] 47 / 8e-06 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.008G040100 [exp] 45 / 6e-05 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.014G122800 [exp] 43 / 0.0001 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005703 [exp] 340 / 1e-117 AT3G03860 310 / 7e-106 APR-like 5 (.1) Lus10020283 [exp] 326 / 4e-112 AT3G03860 296 / 3e-100 APR-like 5 (.1) Lus10020928 [exp] 112 / 1e-28 AT1G34780 259 / 2e-85 APR-like 4 (.1.2) Lus10010354 [exp] 111 / 1e-28 AT1G34780 268 / 2e-89 APR-like 4 (.1.2) Lus10033449 [exp] 111 / 2e-28 AT1G34780 260 / 8e-86 APR-like 4 (.1.2) Lus10036486 [exp] 111 / 3e-28 AT1G34780 272 / 2e-90 APR-like 4 (.1.2) Lus10036337 [exp] 46 / 2e-05 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 46 / 2e-05 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10031522 [exp] 45 / 4e-05 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 45 / 6e-05 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.019G035700.3 pacid=42774449 polypeptide=Potri.019G035700.3.p locus=Potri.019G035700 ID=Potri.019G035700.3.v4.1 annot-version=v4.1 ATGTCTCTGCTTTCTGCTCTCTTCTTGCTCTATATTGGGGTTTTGACGGCATCAGCGTTGTCTGATTGTCCTAACGAATCAGCTTTGTCTCTTCACCATA TTCAATCTCAATGTCCTGTTTCGATCCCTCCAAATCCTCCTCTTCAGGTGGATGGGAAATTCCTGGACAGAGCCTTGACTTCAAAACAGAGGAATGCTTA TACTTCTGTACTGTTTTATGCTTCATGGTGTCCTTTCTCACGCAGTATGCTTCTTAAATTTGACATGCTTAGTTCCATGTTCCCTCAAATCAAACATTTG GCTCTTGAACAATCTTCAGCTCACCCAAGTATATTTTCAAGATATGGAATCCACAGCCTGCCTTCAATATTAATAGTCAACCAGACATCAAAGGTGCAGT ATAGGGGGCCAAAGAACCTTCAATCTCTTGCTCAGTTTTATAGAAAAACAACAGGACTCGAACCAGTTCAACATTTTGCCAAAGATGATGACGACTCTAC TAGCACAGAGGGACGTGAACAATCTATTATGCAGCCATGGAACAGGCCATCCTTGGAGGATATAATAAAAAGTGAACCCTACTTGGTACTGGCTACATTG TTTCTCTGTTTCAGGGTGCTGCTGCTGTATGTATATCCAAAAGCGTTATCACATATCAAGGCTTTCTATGTCTGTTATGTGCCACATTTCAACTTGGAAA TATTTGGCGAGACAAGCCAATTATTTGGGCGTATCCTTCACATGGTCGATGTTAGGAGGATTTGGACTAAGCTGAGATTATTCAAGACCAGAAATTTCCA TGAACGAGCAAAAAATTTCCGGGTTTGGGCGTCTTCACTGGCTTCTGTTTCTTTGGGTGAATCTTCTGCGTCAGCTAGGTCACAATCCTGA
AA sequence Show only first row Show all	>Potri.019G035700.3 pacid=42774449 polypeptide=Potri.019G035700.3.p locus=Potri.019G035700 ID=Potri.019G035700.3.v4.1 annot-version=v4.1 MSLLSALFLLYIGVLTASALSDCPNESALSLHHIQSQCPVSIPPNPPLQVDGKFLDRALTSKQRNAYTSVLFYASWCPFSRSMLLKFDMLSSMFPQIKHL ALEQSSAHPSIFSRYGIHSLPSILIVNQTSKVQYRGPKNLQSLAQFYRKTTGLEPVQHFAKDDDDSTSTEGREQSIMQPWNRPSLEDIIKSEPYLVLATL FLCFRVLLLYVYPKALSHIKAFYVCYVPHFNLEIFGETSQLFGRILHMVDVRRIWTKLRLFKTRNFHERAKNFRVWASSLASVSLGESSASARSQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	0	1
AT4G27130			Translation initiation factor ...		Potri.007G122600 [exp]	3.46	0.6824
AT5G35080			unknown protein		Potri.006G061600 [exp]	3.46	0.7015
AT3G43520			Transmembrane proteins 14C (.1...		Potri.006G217400 [exp]	6.24	0.6593
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.006G113900 [exp]	6.32	0.6693
AT4G25225			unknown protein		Potri.001G124100 [exp]	8.12	0.6618
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073100 [exp]	8.94	0.6638
AT3G61200			Thioesterase superfamily prote...		Potri.014G078900 [exp]	9.48	0.6679
AT1G01230			ORMDL family protein (.1)		Potri.014G101000 [exp]	9.79	0.6768
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.015G005400 [exp]	14.96	0.6153
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	16.97	0.6255	SOYAP4.1

Compare expression of checked genes

Potri.019G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.