Plant FIBer expression Database

CSD3.1 (Potri.019G035800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CSD3.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G18100 237 / 3e-81 CSD3 copper/zinc superoxide dismutase 3 (.1.2)
AT1G08830 202 / 1e-67 CSD1 copper/zinc superoxide dismutase 1 (.1.2)
AT2G28190 186 / 3e-60 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1)
AT1G12520 57 / 1e-10 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G056900
[exp]
297 / 3e-105 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2)
Potri.013G031100
[exp]
214 / 1e-72 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2)
Potri.005G044400
[exp]
212 / 1e-71 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2)
Potri.004G216700
[exp]
193 / 3e-63 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1)
Potri.009G005100
[exp]
187 / 9e-61 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1)
Potri.003G118400
[exp]
50 / 1e-07 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3)
Potri.001G113800
[exp]
48 / 5e-07 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010651
[exp]
247 / 2e-82 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2)
Lus10013615
[exp]
231 / 4e-77 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2)
Lus10004139
[exp]
202 / 9e-68 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2)
Lus10001719
[exp]
203 / 2e-66 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2)
Lus10016155
[exp]
187 / 1e-60 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1)
Lus10021410
[exp]
179 / 2e-57 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1)
Lus10006686
[exp]
49 / 3e-07 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3)
Lus10007031
[exp]
49 / 3e-07 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00080 Sod_Cu Copper/zinc superoxide dismutase (SODC)
Representative CDS sequence
>Potri.019G035800.2 pacid=42773186 polypeptide=Potri.019G035800.2.p locus=Potri.019G035800 ID=Potri.019G035800.2.v4.1 annot-version=v4.1
ATGGCAACAGGGTCTGTGAAAGCGGTGGCTCTCATCACCGGAGACTCTAATGTTAGAGGCTCTCTTCATTTCATTCAAGAACCAAACGGGGCAACACATG
TGACAGGGAGGATAGCTGGCTTATCACCAGGCCTTCATGGGTTTCATATTCATGCTCTTGGTGATACCACCAATGGCTGCAATTCCACTGGACCTCATTT
CAATCCATTAAAGAAGGACCATGGAGCTCCATGTGATAATGAACGTCATGCTGGAGATTTGGGGAACATCATTGCAGGCTCAGATGGTGTTGCAGAAGTT
TCGATCACAGACTTTCAGATACCACTGAGTGGGATGCATTCCATATTGGGGAGGGCTGTTGTTGTGCATGCTGATCCTGATGATCTTGGAAAAGGTGGAC
ATGATCTTAGCAAGACAACTGGGAATGCAGGTGCAAGGGTTGGATGTGGCATCATTGGGCTCAAATCATCTGTTTAG
AA sequence
>Potri.019G035800.2 pacid=42773186 polypeptide=Potri.019G035800.2.p locus=Potri.019G035800 ID=Potri.019G035800.2.v4.1 annot-version=v4.1
MATGSVKAVALITGDSNVRGSLHFIQEPNGATHVTGRIAGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPCDNERHAGDLGNIIAGSDGVAEV
SITDFQIPLSGMHSILGRAVVVHADPDDLGKGGHDLSKTTGNAGARVGCGIIGLKSSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G18100 CSD3 copper/zinc superoxide dismuta... Potri.019G035800
[exp]
0 1 CSD3.1
AT5G65840 Thioredoxin superfamily protei... Potri.014G012100
[exp]
15.49 0.9276
AT3G46660 UGT76E12 UDP-glucosyl transferase 76E12... Potri.001G245900
[exp]
19.94 0.9234
AT2G25605 unknown protein Potri.006G249000
[exp]
20.14 0.9208
AT2G01590 CRR3 chlororespiratory reduction 3 ... Potri.010G110100
[exp]
35.55 0.9204
AT5G62140 unknown protein Potri.012G134500
[exp]
37.94 0.9209
AT2G46820 PSI-P, TMP14, P... THYLAKOID MEMBRANE PHOSPHOPROT... Potri.014G106400
[exp]
48.65 0.9192 TMP14.2
AT5G11840 Protein of unknown function (D... Potri.006G229600
[exp]
57.27 0.9131
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Potri.010G073166
[exp]
61.64 0.9080
AT3G15840 PIFI post-illumination chlorophyll ... Potri.001G204300
[exp]
71.41 0.9130
AT3G13730 CYP90D1 "cytochrome P450, family 90, s... Potri.003G038200
[exp]
102.14 0.8811

Potri.019G035800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.