Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TUA8,TUA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19780 813 / 0 TUA5 tubulin alpha-5 (.1) AT5G19770 813 / 0 TUA3 tubulin alpha-3 (.1) AT1G64740 795 / 0 TUA1 alpha-1 tubulin (.1) AT1G50010 782 / 0 TUA2 tubulin alpha-2 chain (.1) AT1G04820 782 / 0 TOR2, TUA4 TORTIFOLIA 2, tubulin alpha-4 chain (.1) AT4G14960 781 / 0 TUA6 Tubulin/FtsZ family protein (.1.2) AT1G75780 355 / 6e-119 TUB1 tubulin beta-1 chain (.1) AT5G62690 353 / 2e-118 TUB2 tubulin beta chain 2 (.1) AT5G62700 353 / 2e-118 atgcp3, TUB3 tubulin beta chain 3 (.1) AT2G29550 351 / 2e-117 TUB7 tubulin beta-7 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G056800 [exp] 822 / 0 AT5G19780 811 / 0.0 tubulin alpha-5 (.1) Potri.003G220300 [exp] 810 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.001G004600 [exp] 805 / 0 AT5G19780 809 / 0.0 tubulin alpha-5 (.1) Potri.002G111900 [exp] 788 / 0 AT1G50010 858 / 0.0 tubulin alpha-2 chain (.1) Potri.001G289500 [exp] 786 / 0 AT4G14960 855 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.009G085100 [exp] 785 / 0 AT1G50010 852 / 0.0 tubulin alpha-2 chain (.1) Potri.017G081000 [exp] 782 / 0 AT4G14960 852 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.006G095000 [exp] 357 / 8e-120 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.009G040200 [exp] 353 / 3e-118 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005705 [exp] 813 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10020281 [exp] 813 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10013765 [exp] 807 / 0 AT5G19770 914 / 0.0 tubulin alpha-3 (.1) Lus10039169 [exp] 807 / 0 AT5G19780 914 / 0.0 tubulin alpha-5 (.1) Lus10031032 [exp] 783 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10035422 [exp] 783 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10021094 [exp] 352 / 5e-118 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10026813 [exp] 352 / 1e-117 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10036069 [exp] 352 / 1e-117 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10016448 [exp] 351 / 2e-117 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G036000.1 pacid=42774643 polypeptide=Potri.019G036000.1.p locus=Potri.019G036000 ID=Potri.019G036000.1.v4.1 annot-version=v4.1 ATGAGGGAGATAATAAGCATACATATTGGACAAGCAGGGATTCAGGTTGGGAATTCTTGTTGGGAACTTTATTGTCTTGAACATGGAATACAGCCTGATG GAACGATGCCTAGTGACACCTCAATCGGAGCGGAACATGATTCTTTTAATACCTTCTTCAGCGAAACTGGTTCAGGAAAGCATGTGCCGAGAGCTATATT TGTTGATCTCGAACCCTCTGTCATTGATGAAGTCAGAAGTGGGACTTACAGACAGCTTTTTCACCCTGAACAACTTATTTCTGGCAAGGAAGACGCTGCT AATAACTTTGCCAGGGGACATTATACAGTGGGAAGGGAAATTGTTGATCTATGCCTGGACCGCGTGAGGAAATTGGCAGACAATTGCACTGGTTTGCAAG GGTTTTTGGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGCTCGCTGCTTTTGGAACGATTGTCTGTGGATTATGGAAAGAAGTCAAAACT TGGCTTCACCATCTATCCTTCTCCTCAGGTTTCTACTGCTGTCGTGGAACCTTACAACAGTGTTCTCTCCACTCACTCTCTCCTTGAACACACAGATGTT GCTGTGCTTTTGGACAATGAAGCTATTTATGACATCTGCAGGAGATCTTTAGACATTGAAAGACCAACATACACCAATTTGAACCGTTTGATTTCCCAAA TTATCTCATCTTTGACAACTTCCTTGAGGTTTGATGGGGCCATTAATGTGGACATCACAGAGTTTCAAACTAATCTCGTTCCATATCCTCGCATCCATTT CATGCTTTCATCTTATGCTCCAGTAATCTCAGCTGCCAAGGCTTACCATGAGCAGATTTCAGTTCCTGAGATCACAAGTGCTGTGTTTGAACCCTCAAGT ATGATGGCTAAATGTGATCCAAGGCATGGAAAATACATGGCTTGCTGTCTCATGTATCGTGGAGATGTTGTACCAAAGGATGTTAATTCTGCCGTTTCCA CCATTAAGACAAAGAGGACAGTTCAATTTGTTGACTGGTGCCCAACTGGTTTCAAGTGCGGTATAAACTACCAACCACCAACAGTGGTACCTGGAGGTGA TCTTGCTAAAGTGCAGCGTGCAGTTTGCATGATAAGCAACAACACAGCAGTAGCTGAGGTCTTCTCCAGAATTGACCACAAGTTTGATCTCATGTACTCT AAGCGAGCATTTGTCCACTGGTATGTGGGCGAAGGCATGGAGGAAGGTGAATTCTCAGAAGCTCGTGAAGATCTTGCTGCCCTTGAGAAAGACTACGAGG AAGTCGGAGCAGAAGGTGGTGATGACGAGGGTGAGGACGAAGATTACTGA
AA sequence Show only first row Show all	>Potri.019G036000.1 pacid=42774643 polypeptide=Potri.019G036000.1.p locus=Potri.019G036000 ID=Potri.019G036000.1.v4.1 annot-version=v4.1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSIGAEHDSFNTFFSETGSGKHVPRAIFVDLEPSVIDEVRSGTYRQLFHPEQLISGKEDAA NNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDV AVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSS MMAKCDPRHGKYMACCLMYRGDVVPKDVNSAVSTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYS KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEGEDEDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.019G036000 [exp]	0	1	TUA8,TUA1.1
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	1.41	0.9609
AT1G53290			Galactosyltransferase family p...		Potri.001G392700 [exp]	1.41	0.9590
AT1G77280			Protein kinase protein with ad...		Potri.005G182800 [exp]	3.74	0.9264
AT3G54880			unknown protein		Potri.010G227800 [exp]	6.00	0.9335
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.006G136700 [exp]	6.00	0.9434	Pt-SUS1.1
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Potri.016G119100 [exp]	10.00	0.9236
AT4G24130			Protein of unknown function, D...		Potri.001G084200 [exp]	10.39	0.9225
AT4G12650			Endomembrane protein 70 protei...		Potri.002G217300 [exp]	11.83	0.9345
AT3G06035			Glycoprotein membrane precurso...		Potri.010G033400 [exp]	15.09	0.9365
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.003G074700 [exp]	15.74	0.9259

Compare expression of checked genes

Potri.019G036000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.