Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38040 275 / 7e-88 Exostosin family protein (.1) AT4G16745 244 / 1e-74 Exostosin family protein (.1.2) AT5G03795 228 / 1e-68 Exostosin family protein (.1) AT5G11130 224 / 2e-67 Exostosin family protein (.1) AT5G19670 224 / 2e-66 Exostosin family protein (.1) AT5G11610 222 / 4e-66 Exostosin family protein (.1.2) AT4G32790 214 / 6e-63 Exostosin family protein (.1) AT5G25820 215 / 1e-62 Exostosin family protein (.1) AT5G25310 210 / 3e-62 Exostosin family protein (.1) AT3G07620 202 / 1e-59 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072500 [exp] 339 / 4e-112 AT4G38040 232 / 2e-71 Exostosin family protein (.1) Potri.005G147500 [exp] 278 / 3e-89 AT4G38040 653 / 0.0 Exostosin family protein (.1) Potri.007G058400 [exp] 277 / 9e-89 AT4G38040 649 / 0.0 Exostosin family protein (.1) Potri.007G116800 [exp] 253 / 3e-79 AT4G38040 333 / 4e-111 Exostosin family protein (.1) Potri.015G087900 [exp] 247 / 2e-77 AT4G38040 352 / 8e-119 Exostosin family protein (.1) Potri.007G117800 [exp] 244 / 2e-76 AT4G38040 385 / 4e-132 Exostosin family protein (.1) Potri.006G118000 [exp] 247 / 5e-76 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 232 / 5e-70 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.006G239000 [exp] 224 / 2e-65 AT5G25820 607 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012723 [exp] 277 / 1e-88 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10002664 [exp] 276 / 2e-88 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 243 / 6e-74 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 238 / 5e-72 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 225 / 2e-69 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10025178 [exp] 228 / 7e-69 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10001917 [exp] 224 / 4e-67 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10023927 [exp] 223 / 1e-66 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 213 / 6e-64 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 215 / 1e-62 AT5G19670 716 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.019G036500.1 pacid=42773008 polypeptide=Potri.019G036500.1.p locus=Potri.019G036500 ID=Potri.019G036500.1.v4.1 annot-version=v4.1 ATGGCAAACACCACATGGCTTCTCTACTACTTAACTCGCCGCCGATTCTCACCTTCTTTCAGGTCATTCTTCTTCATCCCCACATCCTTAGCTCTTTTTA CTTCTCTCTTCATTCTCTTTTATATTTCCACTACCTCCACTCTCTTCTTTTCCAATCAACAACCATCCATACCTCACCTAAACCAACCACTTTTATCTGG CTCATCATCCATTCCTCAAATTAACATCAGCAATAGTGCTCAAAACCCTTTTGTTCATGTCTCCAATGTCAATCGCCTGAATGAGAATGACAGAGATGGG AGGGAAAGTCAACGGTCTTTACGGCCTCAATTTGGCTCCTCTGATGGAATCTATGTGAACAACGAGCTGTTCCATGATAAAGATATCTTTCTGGAAGACT ATAAACAAATGAATAGGAGCTTTAAGATATATGTTTATCCTCACAGGCGAAATGACCCGTTTGCAAATGTACTTTTGCCGGTTGATTTTGAACCTGGGGG CAATTATGCCAGTGAAAGTTACTTTAAGAAGGCTCTTATGAAAAGTCATTTCATCACAAAAGATCCAGCGAAGGCAGACCTTTTCTTTCTTCCCTTCTCA ATTACAAGGTTGCGGCATGACCCTAGAGTTGGTGTAGGAGGTATCCAAGATTTCATCAGAGATTACATCTTAAATATAAGTCGGAAGTACCCATTTTGGA ATAGGACAGGTGGAGCTGATCATTTCTATGCTGCTTGTCATTCCATTGGGCGGTCAGCAATGGAGAAGTCAGAGGAAGTAAAATTTAATGCCATTCAAGT GGTCTGCTCTTCAAGCTACTTCCTTTCTGGATACATTGCTCACAAAGATGTCTCCCTGCCACAGATTTGGCCTAGACAAGGAGATCCTCCTAATCTTGCA TCGTCAAAAAGGAAGAAACTTGCTTTCTTTGCTGGATCAATCAACTCCCCAGTCCGTGAAAGGCTTCTTCATTCTTGGAGAAATGACTCTGAAATCTTTG CCCACTTTGGTCGGCTCACAACACCTTATGCTGATGAGCTACTTGGAAGCAAATTCTGCCTCCATGTCAAAGGCTTTGAAGTAAACACAGCTCGTATTGG AGACTCACTATATTATGGTTGTGTTCCAGTTATCATTGCCAACCACTATGATCTTCCATTTGCAGACATTCTGAATTGGAAGAGCTTCTCAGTTGTTGTT GCCACTTTAGATATTCCATTGCTTAAGAAAATTCTTAAAGGAATAAGTTCTGACCAATATCTGATGTTTCAAAAAAAGGTACTAGAGGTGCGAAAACATT TCCAGTGGCACTGCCCTCCAGTTGATTACGATGCGTTTTACATGGTGATGTATGAACTATGGCTTCGACGGACTTCTGTGAGGGTCTCATTGCCAGTGTC TAAGAACCCTAATCATTGA
AA sequence Show only first row Show all	>Potri.019G036500.1 pacid=42773008 polypeptide=Potri.019G036500.1.p locus=Potri.019G036500 ID=Potri.019G036500.1.v4.1 annot-version=v4.1 MANTTWLLYYLTRRRFSPSFRSFFFIPTSLALFTSLFILFYISTTSTLFFSNQQPSIPHLNQPLLSGSSSIPQINISNSAQNPFVHVSNVNRLNENDRDG RESQRSLRPQFGSSDGIYVNNELFHDKDIFLEDYKQMNRSFKIYVYPHRRNDPFANVLLPVDFEPGGNYASESYFKKALMKSHFITKDPAKADLFFLPFS ITRLRHDPRVGVGGIQDFIRDYILNISRKYPFWNRTGGADHFYAACHSIGRSAMEKSEEVKFNAIQVVCSSSYFLSGYIAHKDVSLPQIWPRQGDPPNLA SSKRKKLAFFAGSINSPVRERLLHSWRNDSEIFAHFGRLTTPYADELLGSKFCLHVKGFEVNTARIGDSLYYGCVPVIIANHYDLPFADILNWKSFSVVV ATLDIPLLKKILKGISSDQYLMFQKKVLEVRKHFQWHCPPVDYDAFYMVMYELWLRRTSVRVSLPVSKNPNH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38040			Exostosin family protein (.1)		Potri.019G036500 [exp]	0	1
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	13.26	0.8184
AT1G19835			Plant protein of unknown funct...		Potri.005G237100 [exp]	20.12	0.7876
AT2G40270			Protein kinase family protein ...		Potri.001G280200 [exp]	22.09	0.7874
AT2G42880		ATMPK20	MAP kinase 20 (.1)		Potri.002G059900 [exp]	22.24	0.7551	Pt-ATMPK20.2
AT4G33080			AGC (cAMP-dependent, cGMP-depe...		Potri.006G224800 [exp]	22.44	0.7909
AT5G59350			unknown protein		Potri.008G054400 [exp]	23.23	0.7853
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Potri.001G472700 [exp]	27.54	0.7321
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	32.93	0.7843
AT1G13635			DNA glycosylase superfamily pr...		Potri.010G137300 [exp]	35.32	0.7790
AT1G79420			Protein of unknown function (D...		Potri.010G174200 [exp]	36.26	0.7864

Compare expression of checked genes

Potri.019G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.