Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79000 109 / 2e-26 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT1G16710 100 / 2e-23 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT1G16705 65 / 8e-13 p300/CBP acetyltransferase-related protein-related (.1.2) AT3G12980 59 / 2e-09 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003301 [exp] 335 / 4e-115 AT1G79000 171 / 2e-47 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.014G000500 [exp] 234 / 9e-70 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.007G003400 [exp] 152 / 3e-41 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034780 [exp] 160 / 8e-44 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033321 [exp] 157 / 1e-42 AT1G79000 1965 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033319 [exp] 135 / 3e-35 AT1G79000 1952 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G036800.1 pacid=42774295 polypeptide=Potri.019G036800.1.p locus=Potri.019G036800 ID=Potri.019G036800.1.v4.1 annot-version=v4.1 ATGGAGAAGGAGATGAATGTGCAAGCGCATCTGTCCGGGCAAATCTCCGGGCAGGTTCAGAATCAGTTACAGCCCCAGCAAAATGGGAATCAACAGATGC AGAATTTATCAGCTCCTACCACTGGAGGTGTTGCTGCTGCCGGTGCTCATTCTGTTAATGTGTACAATGCTGAACCTGAGCTTCATAGATATCGCTGGCT TATGCAACAAAAAATATTTTCAATTATATTGCAGAAGCAGTCTCAGCCGGTTGGCGATCAACAGAAACAAAGGTTTAAGGAATTCGCCAAACGATTAGAG GAGGGTCTATTTAAAGCTGCTCAGACAAAGGATGATTATTTGAACATGAATACCCTAGAGAGTCGTCTGAGTAGTCTGCTCAAGCGCCCCCCTGCGAATA GTCAAAACCAACGGCATCCACAGCTCGTTAATTCTTCCTCATCCATTGGTACCATGATACCAACTCCTGGTATGTCAAATAGTGGGAATTCGAATATGAT GACTTCTTCTGTAGATACCATGATGATCTCTTCCAGTGGATGTGATAGCATAGCACCTATAGCTGCCAACACAGGGGGCCTGTTGCCATCTAGTGGCATG CACAATGGTTCCTTTGGTAGACCAGATGGAAATCTGTCTAATGGCTATCAGCAGCATCAGCATCTGCATCTGCTGAACAATGATGCTTTTGGTCAGTCTC TGCTCATATCTGATCCTAGCAGTCAAGTAAAGCGTGAGCCTGGAATGGAGCACCATAATGATGTTTTGCACTCACAAACCTCAGACCACTTCCAAATATC TGAATTGCAAAACCAATTCCAGCAAATTGTGCTTGGAGACCATTCTAGGAATGCGCAGAATCCCCCTCATCCAGACCGACAGCATGACATGAGCTCATAA
AA sequence Show only first row Show all	>Potri.019G036800.1 pacid=42774295 polypeptide=Potri.019G036800.1.p locus=Potri.019G036800 ID=Potri.019G036800.1.v4.1 annot-version=v4.1 MEKEMNVQAHLSGQISGQVQNQLQPQQNGNQQMQNLSAPTTGGVAAAGAHSVNVYNAEPELHRYRWLMQQKIFSIILQKQSQPVGDQQKQRFKEFAKRLE EGLFKAAQTKDDYLNMNTLESRLSSLLKRPPANSQNQRHPQLVNSSSSIGTMIPTPGMSNSGNSNMMTSSVDTMMISSSGCDSIAPIAANTGGLLPSSGM HNGSFGRPDGNLSNGYQQHQHLHLLNNDAFGQSLLISDPSSQVKREPGMEHHNDVLHSQTSDHFQISELQNQFQQIVLGDHSRNAQNPPHPDRQHDMSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	0	1
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	1.00	0.9457	HMGB906,ATHMG.1
AT3G57990			unknown protein		Potri.016G046900 [exp]	2.44	0.9224
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	3.87	0.9159
AT4G02715			unknown protein		Potri.005G211400 [exp]	3.87	0.8972
AT2G32910			DCD (Development and Cell Deat...		Potri.005G043100 [exp]	5.00	0.8928
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	5.09	0.8978
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.002G069500 [exp]	5.29	0.8972
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021400 [exp]	5.91	0.9063
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	5.91	0.9053
					Potri.010G007250 [exp]	6.00	0.8952

Compare expression of checked genes

Potri.019G036800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.