Plant FIBer expression Database

Potri.019G038142 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G037900
[exp]
67 / 5e-14 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G038142.1 pacid=42773180 polypeptide=Potri.019G038142.1.p locus=Potri.019G038142 ID=Potri.019G038142.1.v4.1 annot-version=v4.1
ATGCCTTCCTGTCGGCTTTCCAATTCCAGAGAAAAAGGTTTGCTGGTTTCAACTGATGAGCACTATTTTCTTTCCAAAAGAATAAAAATTTTGGAATTGC
TGGCAGCAAATTCTGTAGTTAGCAATCATAATCCCTCCATTGCATCTCCAGGGCAAGATAGTTGTTCAGCAATGGCAAGCATTACACCTTCGCCTGCCGC
AGCCATCTCCTCTTCGCCTAAACATGACCTGACTTCATCTTCTTTGCCTTCTGATTCCCCCACTAATTTAGCCACAAGCTCAAGCATCGAGTATCAAACA
CAGCCTACAACCTTAAAGATGAACAATTCAAGTAAAATGGATGAGCTTCCTCTCTCATCATCCAATATTCAAAATTCAATGTTATAA
AA sequence
>Potri.019G038142.1 pacid=42773180 polypeptide=Potri.019G038142.1.p locus=Potri.019G038142 ID=Potri.019G038142.1.v4.1 annot-version=v4.1
MPSCRLSNSREKGLLVSTDEHYFLSKRIKILELLAANSVVSNHNPSIASPGQDSCSAMASITPSPAAAISSSPKHDLTSSSLPSDSPTNLATSSSIEYQT
QPTTLKMNNSSKMDELPLSSSNIQNSML

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G038142
[exp]
0 1
AT1G05910 cell division cycle protein 48... Potri.017G031400
[exp]
2.44 0.9123
AT4G20190 unknown protein Potri.001G074300
[exp]
3.74 0.8815
AT2G40770 zinc ion binding;DNA binding;h... Potri.019G060126
[exp]
8.83 0.8835
AT5G04420 Galactose oxidase/kelch repeat... Potri.008G030901
[exp]
15.87 0.8863
AT4G22330 ATCES1 Alkaline phytoceramidase (aPHC... Potri.017G057500
[exp]
17.14 0.8760
Potri.005G233101
[exp]
19.49 0.8468
AT5G24170 Got1/Sft2-like vescicle transp... Potri.012G012700
[exp]
19.62 0.8766
AT4G14240 CBS domain-containing protein ... Potri.008G202100
[exp]
22.84 0.8651
AT1G20760 Calcium-binding EF hand family... Potri.002G008300
[exp]
23.83 0.8814
AT4G26550 Got1/Sft2-like vescicle transp... Potri.001G467200
[exp]
24.65 0.8688

Potri.019G038142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.