Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62800 146 / 1e-41 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT2G28380 117 / 6e-30 DRB2 dsRNA-binding protein 2 (.1) AT3G26932 114 / 3e-29 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 108 / 4e-27 DRB5 dsRNA-binding protein 5 (.1) AT1G09700 67 / 1e-12 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038184 [exp] 361 / 2e-125 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038100 [exp] 313 / 4e-109 AT3G62800 66 / 4e-13 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.013G061500 [exp] 308 / 2e-102 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G037900 [exp] 306 / 3e-97 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 160 / 1e-45 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.017G063700 [exp] 122 / 1e-31 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 120 / 5e-31 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.005G045700 [exp] 119 / 5e-30 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 117 / 2e-29 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002619 [exp] 161 / 5e-46 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10032007 [exp] 121 / 2e-31 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10035176 [exp] 121 / 2e-31 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 109 / 5e-27 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 104 / 4e-25 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10003362 [exp] 82 / 1e-18 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 85 / 5e-18 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10023248 [exp] 62 / 2e-10 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10008862 [exp] 61 / 3e-10 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Potri.019G038226.1 pacid=42773956 polypeptide=Potri.019G038226.1.p locus=Potri.019G038226 ID=Potri.019G038226.1.v4.1 annot-version=v4.1 ATGAATAATAAAAGAGTAATGTACAAATCAAAGCTTCAACAACTGTCCCAGCAGAGAGGATGGGAGATCCCTAAGTATGAAGTCACTAAAGAGGGACAAG AGCACAGCCCTCACTTTTATGCCACTGTCACCGTCGACGCCACCCTCTTTTCTACTCCTTTCCCCTCTTCTTCCACTAAGAAAGCTCAAAACGACGCTGC TAAGCTCGCCTATAAATACTTCTCCGACCACCCTCGCCCTTCCTCCTCCTCCCCCCTTAATGTTTCTGCAGACTGTTCGGGTGGAAGCGCTGGGGAGAAT ACTCGTCCATCTCCCGGAGGGAAATTGGAATTAGACATACAAGATGCAAATCCAACTCCCCTGTCAAATGAAGCCGGGGCAGTTGCCAAGACTGATGAGA GTTTTGGAGGTATTCTGCACTTGTTTAAAAACCAGCTGCAAACCTATGCGCAAAAGAGAAATTTCACTCGACCTGTGTATTCTTGTGAGCGTGTGGGTCC TCCTCATGCTATTCGCTTTAAGTGCAAGGTCACTGTAAACGGACAAACCTATGAGAGTCGGGAATATTTTCCCACATTGAGCAAAGCTGAAAATGCAGCT GCAAAAGCTGCATTGATGTCATTGTTGCCAAATGGAGTTGAAGAGGATGAATCTGGTTATAAGAATCTTTTACAAGATATGGCTCAGAGAGAAGGTTGTG GTTTGCCAACTTATTTTACAGAGAAATCTGGTGAAGCTCATGCGCCTACTTTCATTTCAACAGTGGAGATAGATGGAGTGAATTTTACTGGAAAAGAAGC AAGAAATAAGAAGCAAGCAGAGATGAGTGCTGCAAAGATTGCATACACAGCTCGAAGACGTTGA
AA sequence Show only first row Show all	>Potri.019G038226.1 pacid=42773956 polypeptide=Potri.019G038226.1.p locus=Potri.019G038226 ID=Potri.019G038226.1.v4.1 annot-version=v4.1 MNNKRVMYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSTKKAQNDAAKLAYKYFSDHPRPSSSSPLNVSADCSGGSAGEN TRPSPGGKLELDIQDANPTPLSNEAGAVAKTDESFGGILHLFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTYESREYFPTLSKAENAA AKAALMSLLPNGVEEDESGYKNLLQDMAQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVNFTGKEARNKKQAEMSAAKIAYTARRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G038226 [exp]	0	1
AT3G53340	CCAAT	NF-YB10	"nuclear factor Y, subunit B10...		Potri.016G085000 [exp]	4.47	0.7863
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G038100 [exp]	6.48	0.7834
AT1G15780			unknown protein		Potri.003G013900 [exp]	12.00	0.8154
AT1G70590			F-box family protein (.1)		Potri.008G187200 [exp]	13.41	0.7202
					Potri.010G181700 [exp]	16.79	0.7955
AT5G10350			RNA-binding (RRM/RBD/RNP motif...		Potri.005G073200 [exp]	18.16	0.7474
					Potri.011G118166 [exp]	21.07	0.7919
AT5G63440			Protein of unknown function (D...		Potri.012G096500 [exp]	25.39	0.7213
					Potri.001G194901 [exp]	27.74	0.7666
					Potri.005G209300 [exp]	35.87	0.6896

Compare expression of checked genes

Potri.019G038226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.