Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17920 1455 / 0 ATCIMS, ATMETS, ATMS1 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) AT3G03780 1424 / 0 ATMS2 methionine synthase 2 (.1.2.3) AT5G20980 1327 / 0 ATMS3 methionine synthase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061800 [exp] 1519 / 0 AT5G17920 1440 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.004G190900 [exp] 1443 / 0 AT5G17920 1401 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.009G152800 [exp] 1434 / 0 AT5G17920 1394 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002620 [exp] 1440 / 0 AT5G17920 1430 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10020273 [exp] 1439 / 0 AT5G17920 1434 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10008422 [exp] 1400 / 0 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10003363 [exp] 1395 / 0 AT5G17920 1384 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [poplar] [flax] Methionine_synt PF01717 [poplar] [flax] Meth_synt_2 Cobalamin-independent synthase, Catalytic domain CL0160 [poplar] [flax] Methionine_synt PF08267 [poplar] [flax] Meth_synt_1 Cobalamin-independent synthase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G038268.1 pacid=42774105 polypeptide=Potri.019G038268.1.p locus=Potri.019G038268 ID=Potri.019G038268.1.v4.1 annot-version=v4.1 ATGGCATCACACATTGTTGGATATCCTCGTATGGGCCCCAAGAGAGAGCTCAAGTTTGCACTGGAATCTTTCTGGGATGGGAAGAGCAGTGCTGAGGATT TGCAAAAGGTTGCAGCTGATCTCAGGGAATCCATCTGGAAGCAGATGGCTGATACTGGGATCAAATACATCCCGAGCAACACCTTCTCTTACTATGACCA GATGCTCGACACCACCGCAATGCTCGGTGCAGTTCCACCAAGATATGGCTGGAATGGTGGTGAGATTGGATTCGATGTTTATTTCTCCATGGCTAGAGGA AATGCCTCTGTTCCCGCCATGGAAATGACCAAGTGGTTTGACACCAACTACCATTTCATTGTCCCCGAATTGGGTCCTGATGTCAAGTTCTCATATGCTT CTCACAAAGCAGTGACTGAATACAAGGAGGCTAAGGCACTTGGAGTAGACACTGTACCAGTCCTTATTGGCCCAGTCTCCTACTTGTTGCTATCCAAACC TGCAAAGGGTGTGGAGAAAAGCTTTTCTCTCCTCTCCCTTCTCGGAAAAATCCTTCCAATCTACATGGAGGTTATTTCAGAGCTTAAAGAAGCTGGTGCA TCCTGGATTCAATTTGACGAGCCTACACTCGTGATGGATCTTGAATCTCACAAATTGCAAGCATTTACTGGGGCCTACTCTGCACTAGAGTCAACTCTAT CTGGCTTGAATGTTCTTATCGAAACCTACTTTGCTGATATTCCTGCCGAGCAATACAAGACCCTCACCTCTTTGAAGGGTGTTACTGCATTTGGTTTTGA TCTGGTTCGTGGAAACAAGACCCTTGACTTGATCAAGGGTGATTTCCCTGAGGGAAAATATCTCTTTGCTGGAGTGGTAGATGGAAGGAACATCTGGGCT AATGATCTTGCTGCTTCTTTCAGCACCCTCGAAACTCTTGAGGGCATTGTTGGAAAAGACAAGCTTGTAGTCTCCACTTCCTGCTCACTTCTCCACACTG CTGTTGATCTTGTCAATGAGACCAAGCTTGACAAGGAAATAAAATCATGGCTTGCATTTGCTGCTCAAAAAGTTGTTGAAGTAAATGCATTGGCCAAGGC TTTGGCCGGTCAAAAGGACGAGGAAATCTTCTCTGCTAATGCTGCTGCCCTGGCCTCAAGAAAGTCCTCCCCACGAGTCAACAATGAGGCTGTTCAAAAG GCTGCTGCTGCTTTGAAGGGTTCTGATCACCGCCGTGCTACAAATGTTAGTGCCAGACTTGATGCTCAGCAAAAGAAGCTTAACCTTCCCATCCTACCAA CCACCACAATTGGGTCCTTCCCACAAACCATGGAACTAAGGAAAGTCCGCCGTGAATACAAAGCCAAAAAGGTATCTGAAGATGACTATGTTAAAGCCAT CAAGGAGGAAATTAGAAAAGTTGTCAAACTTCAAGAGGAGTTTGATATTGATGTTTTGGTTCATGGAGAGCCTGAGAGAAACGATATGGTTGAATACTTC GGAGAGCAATTGTCAGGTTTTGCATTCTCTGCCAATGGTTGGGTGCAGTCTTATGGCTCTCGCTGTGTGAAGCCACCAATTATATATGGTGATGTGAGCC GCCCCAAGTCAATGACTGTCTTCTGGTCTACCTTGGCTCAGAGCATGACTGCCCGCCCAATGAAGGGAATGCTTACAGGCCCTGTCACCATTCTCAACTG GTCCTTCGTTCGAAATGATCAACCCAGATATGAGACTTGCTACCAGATTGCTTTGGCCATTAAGGATGAAGTGGAGGATCTTGAGAAGAATGGTATCACT GTTATCCAAATTGACGAGGCTGCTTTGAGAGAGGGCTTGCCTCTTAGGAAGTCTGAGCAAGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGGATCA CCAACTGTGGCGTACAGGACACCACTCAGATCCACACTCACATGTGCTACTCCAACTTCAATGACATTATCCAATCAATTATCGACATGGATGCTGATGT GATCACCATAGAGAACTCTCGCTCCGATGAAAAGCTTCTCTCAGTCTTCCGTGAGGGAGTGAAATATGGTGCTGGAATTGGCCCTGGTGTCTATGATATC CACTCTCCTAGAATACCATCAACCGAGGAGATTGCTGACAGAATTAACAAGATGCTTGCAGTGCTTGAGACAAACATCTTATGGGTTAACCCTGATTGTG GACTCAAGACTCGCAAGTACACCGAGGTGAAGCCAGCTCTCAAGAACATGGTTGATGCTGCCAAGCTGCTCCGCACCCAGCTTGCCAGTGCCAAGTGA
AA sequence Show only first row Show all	>Potri.019G038268.1 pacid=42774105 polypeptide=Potri.019G038268.1.p locus=Potri.019G038268 ID=Potri.019G038268.1.v4.1 annot-version=v4.1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRESIWKQMADTGIKYIPSNTFSYYDQMLDTTAMLGAVPPRYGWNGGEIGFDVYFSMARG NASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKALGVDTVPVLIGPVSYLLLSKPAKGVEKSFSLLSLLGKILPIYMEVISELKEAGA SWIQFDEPTLVMDLESHKLQAFTGAYSALESTLSGLNVLIETYFADIPAEQYKTLTSLKGVTAFGFDLVRGNKTLDLIKGDFPEGKYLFAGVVDGRNIWA NDLAASFSTLETLEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDKEIKSWLAFAAQKVVEVNALAKALAGQKDEEIFSANAAALASRKSSPRVNNEAVQK AAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTMELRKVRREYKAKKVSEDDYVKAIKEEIRKVVKLQEEFDIDVLVHGEPERNDMVEYF GEQLSGFAFSANGWVQSYGSRCVKPPIIYGDVSRPKSMTVFWSTLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYETCYQIALAIKDEVEDLEKNGIT VIQIDEAALREGLPLRKSEQAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIQSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI HSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLLRTQLASAK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.019G038268 [exp]	0	1
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.001G320400 [exp]	1.73	0.9676
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.009G152800 [exp]	2.00	0.9653
AT2G44160		MTHFR2	methylenetetrahydrofolate redu...		Potri.017G000300 [exp]	2.00	0.9708	Pt-MTHFR1.1,MTHFR2
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.017G059400 [exp]	4.89	0.9418	Pt-SAHH.2
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	5.91	0.9404
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	6.00	0.9340	CAld5H/F5H4,Pt-FAH1.4
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	6.92	0.9357	Pt-4CL.3,Ptr4CL3
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	7.74	0.9174
AT5G18500			Protein kinase superfamily pro...		Potri.010G001600 [exp]	8.06	0.9245
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G320500 [exp]	9.38	0.9289	SAHH.1

Compare expression of checked genes

Potri.019G038268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.