Plant FIBer expression Database

Potri.019G038400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55000 414 / 1e-146 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
AT3G09030 58 / 2e-09 BTB/POZ domain-containing protein (.1)
AT2G24240 46 / 2e-05 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G062500
[exp]
482 / 2e-173 AT5G55000 413 / 2e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Potri.003G129300
[exp]
49 / 3e-06 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Potri.016G112900
[exp]
48 / 6e-06 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1)
Potri.006G185300
[exp]
46 / 1e-05 AT2G24240 773 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Potri.018G107600
[exp]
45 / 3e-05 AT2G24240 766 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002622
[exp]
448 / 3e-160 AT5G55000 462 / 1e-165 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Lus10020270
[exp]
407 / 1e-140 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0033 POZ PF02214 BTB_2 BTB/POZ domain
CL0505 Pentapeptide PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Representative CDS sequence
>Potri.019G038400.2 pacid=42774165 polypeptide=Potri.019G038400.2.p locus=Potri.019G038400 ID=Potri.019G038400.2.v4.1 annot-version=v4.1
ATGATGAAAGACCACCCTTTCTCTTCTCTAATTCGTCTCAACATTGGAGGGAAGAAATTTTGCACCACAATTGATACATTAACACAGCGTGAGCCTGATT
CCATGCTTGCGGCCATGTTCAGTGGAAGACACACTGTGTCTGAGGATCCTGATAAGGGATACGTCTTCATTGATAGGGATGGGAAACACTTTCGGCATAT
TTTGAATTGGTTGAGGGATGGTGTGGTTCCCACACTAACTGATGCTGAATATTCAGAGCTTATGCGAGAGGCAGTATACTATCAGCTACTTGGGCTCGTA
GAAGGAATCAATTCTGTTCTGACTAGGAGAAGGGAAGGTGACGAGTTGGAAGCTGAATTGACACGGGCGGATATCATCAAATGTTTACAATATGAGAAAG
TGAAGTTTCGAGGAGTTAATTTTTCTGGCCTTGATCTCTCTAAACTGGACCTCTCATATGTTGACTTCAGCTATGCATCTCTGAAAAATGTATTCTTCTC
TCGTGCAAACCTACAGTGTGCAAAATTCCGGGATGTGGATGCTGAGGGTTCCATATTCCACAATGCAACTTTGCGGGAATGTGAATTTACCGGTGCAAAT
CTCCGAGGAGCTTTATTAGCAGGTGCCAACCTTAAGAGTGCAAACCTACAAGATGCTTGTCTGGTTGATTGCAGTTTTTGTGGAGCAGATCTGAGTTCTG
CACACTTACAGACTGCTGATCTCACTAATGCCAACTTGGAAGGAGCTAATCTAGAAGGAGCCAATCTGAAGGGTGCAAAATTGAATAATGCCAATCTAAA
GGGTGCAAATCTTCAACGGGCTTATCTACGACATGTCAATCTTCAAAATACACATTTGGAAGATGCAAGGCTTGATGGTGCCAATTTGGTTGGAGCAATT
CGATAA
AA sequence
>Potri.019G038400.2 pacid=42774165 polypeptide=Potri.019G038400.2.p locus=Potri.019G038400 ID=Potri.019G038400.2.v4.1 annot-version=v4.1
MMKDHPFSSLIRLNIGGKKFCTTIDTLTQREPDSMLAAMFSGRHTVSEDPDKGYVFIDRDGKHFRHILNWLRDGVVPTLTDAEYSELMREAVYYQLLGLV
EGINSVLTRRREGDELEAELTRADIIKCLQYEKVKFRGVNFSGLDLSKLDLSYVDFSYASLKNVFFSRANLQCAKFRDVDAEGSIFHNATLRECEFTGAN
LRGALLAGANLKSANLQDACLVDCSFCGADLSSAHLQTADLTNANLEGANLEGANLKGAKLNNANLKGANLQRAYLRHVNLQNTHLEDARLDGANLVGAI
R

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G55000 FIP2 potassium channel tetramerisat... Potri.019G038400
[exp]
0 1
AT3G58130 N-acetylglucosaminylphosphatid... Potri.012G041700
[exp]
6.00 0.8749
AT1G01230 ORMDL family protein (.1) Potri.002G174400
[exp]
6.70 0.8688
AT1G73350 unknown protein Potri.004G066700
[exp]
6.92 0.8083
AT1G33970 P-loop containing nucleoside t... Potri.019G077300
[exp]
7.34 0.8263
AT3G02920 ATRPA32B Replication protein A, subunit... Potri.018G091700
[exp]
11.87 0.7267
AT1G02960 unknown protein Potri.002G208058
[exp]
12.48 0.8159
AT1G66590 ATCOX19-1 A. THALIANA CYTOCHROME C OXIDA... Potri.001G187200
[exp]
14.49 0.8131
AT1G60940 SNRK2-10, SNRK2... SNF1-RELATED KINASE 2B, SUCROS... Potri.004G218001
[exp]
15.74 0.8432
AT5G66050 Wound-responsive family protei... Potri.005G105900
[exp]
16.58 0.7941
AT5G18940 Mo25 family protein (.1.2) Potri.008G198900
[exp]
17.60 0.8256

Potri.019G038400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.