Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35910 845 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT1G54440 611 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT2G32415 206 / 3e-55 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT5G24340 49 / 1e-05 3'-5' exonuclease domain-containing protein (.1) AT2G25910 49 / 1e-05 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062800 [exp] 1416 / 0 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.002G229000 [exp] 205 / 1e-54 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Potri.015G009500 [exp] 50 / 9e-06 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1) Potri.006G234000 [exp] 46 / 9e-05 AT2G25910 486 / 8e-174 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2) Potri.005G020000 [exp] 44 / 0.0006 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005691 [exp] 908 / 0 AT5G35910 814 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10039170 [exp] 899 / 0 AT5G35910 828 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020293 [exp] 683 / 0 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020300 [exp] 544 / 0 AT5G35910 477 / 1e-157 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10031563 [exp] 201 / 6e-53 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10015114 [exp] 199 / 1e-52 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10020301 [exp] 50 / 5e-07 AT5G35910 61 / 6e-12 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10022376 [exp] 46 / 0.0001 AT5G24340 544 / 0.0 3'-5' exonuclease domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [poplar] [flax] HRDC-like PF00570 [poplar] [flax] HRDC HRDC domain CL0219 [poplar] [flax] RNase_H PF01612 [poplar] [flax] DNA_pol_A_exo1 3'-5' exonuclease CL0219 [poplar] [flax] PF08066 [poplar] [flax] PMC2NT PMC2NT (NUC016) domain
Representative CDS sequence Show only first row Show all	>Potri.019G038701.1 pacid=42774529 polypeptide=Potri.019G038701.1.p locus=Potri.019G038701 ID=Potri.019G038701.1.v4.1 annot-version=v4.1 ATGACCCAAAACGACGGCGAACCGGCAGAAGAAGAATGCCCCCCAAAACCCCAAACTTTACAAACCCTAACGGCTACCCATTTATCCAGTTCAATCTCGA ACCTCTCCGCATCCTCTCGCGCGATTCCGTCAAACAAAGACTTCCATTTCTACTACAACTTCGACGAATTCAAGGTCCCGATTCAAGAAATCGCAGCGAA ATCCCAGTCGCTACTCGAATCAATCGGGTCTTCCTCTTCAAATGATTTATTCAAAGAGAAATTACAGTTCCCTAGCGATGTCGACATCGACGAGGCTTAT GATTGGTTGGTGAATGTAAACGACGAGATTTTTGAGCGTTTTGATACTTCAATTGATGAATTCAAGAGAGTCCGAGAGGAAACGGGTCGGGCTGTGGACG TGGATAATGAGGATGGGTTTCAATTGGTGCTTGGGAAGAAGAATAAGAGGTTAATGAAGGAAGCGTTGAGTGATGACTCGGCGAGTTGTGCTGGTGTTGA CTCAGGAGTGAAAGTGGCGGATAACAAGAAGGGGATTTTGGGAAATAAGGCGAAGGTCCCGTTTCATATACCTACGATAAGAAGGCCGCAAGAGGAGCAT AATATTTTGGTTAATAATTCGAATAGGGGTTTTGAGCATGTTTGGTTGGAGAGAAGCGAAGATGGGTCGAGGGCTATTCATCCACTGGAAAAGCTGTCTG TTCTTGATTTTGTGGATAAAAGAATTGGGGATGTTGAGCCTGCGCCACCTCTTCCAACAGAGAGTACTCCATTTAAGCTTGTGGAAGAAGTCAAGGATTT GAAGGAGTTGGCAGCTAAATTGCGTGGTGTAAATGAATTTGCGGTTGATTTGGAGCACAATCAGTATCGATCTTTTCAAGGATTGACATGCTTGATGCAA ATTTCAACTAGAACCGAGGATTTTATTGTTGATACATTAAAACTTCGAATACATGTTGGCCCATATCTTAGGGAAGTTTTCAAGGATCCTGCCAAGAGAA AGGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTTCAACGTGACTTTGGCATATATATCTGCAATCTGTTTGACACTGGACAGGCCTCGAGAGTGCT GAAGTTGGAAAGAAATAGTTTGGAGTACCTTCTACATCACTTTTGTGGGGTCACTGCCAAGAAAGAATACCAGAATGCAGAATGGAGACTACGCCCTCTT CCTGATGAGATGATAAGATATGCCAGAGAAGATACCCACTATCTGCTGCATATATATGATTTGATGAGGGCATTGTTACTCACAAAGCACAGTGACAATG ATAATGGCGATCCACCATTGGTAGAGGTCTACAAACGCAGTTATGATGTATGCATGCAGTTGTATGAGAAGGAGCTTTTCACTGAAAATTCGTATCTCAA TATGTATGGGTTGCCTAATGCTGGTTTCAATGCTCAGCAGCTTGCCATTGTTGCAGGGCTTTACGAGTGGAGAGATGCCATTGCCCGTGCAGAAGATGAG AGCACGGGTTATATATTGCCAAACAAAACTCTTCTTGAAATTGCCAAGGAGATGCCTGTTACGCCTAGCAAATTACGTCGACTGCTGAAATCAAAGCACT CATATATTGAACGACACCTTAGTTCTGTTGTTAGCATCATTAGGCACTCCATGCAAACCTCTGCTGCTTTTGAAGCTGCTGTTCAACATTTAAAGGAGAG ACTCATGGAAACAGCCTCACAAAAAGATACAGAAGTTAATGATGGTTGTGAAGAAAAAAGCGTTCATGGTGGCAATGGAATGAATGGCAGTGTGGCTGCT GAAACTTCTGTGCAGCTGAAAAGGGGGCTTCTGAAGCAGGGAAGCAGTATTGTTGAACTTGGCAAAGGTGGGCACGAAAGCTCTGCCAAGCATCATGGTG AAAATGGTGGAGTGAAGACTGGATCTAGTAGTTATATTTCAGATACATCTCCAGCAGCAAAGGTTGCTGGAGCAACTGTTCAGATTCTAAAGAAGCCAAC TGGTGCTTTTGGGGCCCTTCTCAGGGGTGCAGCAGCAAAGAGGAAACTTGGTACTGATAAAAAGGTCGGAGAAGAGGTCAAGTTAGAAAAGATAAGATCC TCAGTGAACCTTCCATTCCATTCATTTATGCCCAGAAATGAACCTCCAAAACCAGTAGTAGAAGAGCCCATTGTTTCAGAAATTTCACATCCTGAAGAAT CTTTGGCTGTCCCAGCTACTGGTTCTAGTTTGCAAGATATAATAATGTTGGATGATGATTCGGATATGGAACAAGACACTCGTATTGGAGAACCAGAGAG AGATGATTCCAAGCCCACAAATGTCAACAGGGATGACATATCTTCAGGAACTGCTTTGGAAACAGACAAAGTTGAGGAACCTGTTTCTCTGTCAGATTTG TCTACAAGTTCCCAAAAGCGCTTCCAATCCAGTAATCAAAATAGAAGAACTGCAGAAGGTAAGAAATCTGGAGAATCAAGTAGTGTTTTGAAGCTGAAGC CATTTGATTATACTGCTGCACTCAGATTTGGTGAAGGCCCGACAGAAAAGTTGAAAGTAGGGAATGACAAAAATCAGAGGGACGTGCGTGTTTCTGTGGG TAAGATTAAAAGTTCTCCAGGAGCCCCAGTACAAAAGGATGATGAGACAGGAGAATTTCGCGAAGGCAGAAGACGTCAGGCCTTTCCCGCAAGTGGGAAT AGGAGTGCAACATTCCGATGA
AA sequence Show only first row Show all	>Potri.019G038701.1 pacid=42774529 polypeptide=Potri.019G038701.1.p locus=Potri.019G038701 ID=Potri.019G038701.1.v4.1 annot-version=v4.1 MTQNDGEPAEEECPPKPQTLQTLTATHLSSSISNLSASSRAIPSNKDFHFYYNFDEFKVPIQEIAAKSQSLLESIGSSSSNDLFKEKLQFPSDVDIDEAY DWLVNVNDEIFERFDTSIDEFKRVREETGRAVDVDNEDGFQLVLGKKNKRLMKEALSDDSASCAGVDSGVKVADNKKGILGNKAKVPFHIPTIRRPQEEH NILVNNSNRGFEHVWLERSEDGSRAIHPLEKLSVLDFVDKRIGDVEPAPPLPTESTPFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQ ISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTGQASRVLKLERNSLEYLLHHFCGVTAKKEYQNAEWRLRPL PDEMIRYAREDTHYLLHIYDLMRALLLTKHSDNDNGDPPLVEVYKRSYDVCMQLYEKELFTENSYLNMYGLPNAGFNAQQLAIVAGLYEWRDAIARAEDE STGYILPNKTLLEIAKEMPVTPSKLRRLLKSKHSYIERHLSSVVSIIRHSMQTSAAFEAAVQHLKERLMETASQKDTEVNDGCEEKSVHGGNGMNGSVAA ETSVQLKRGLLKQGSSIVELGKGGHESSAKHHGENGGVKTGSSSYISDTSPAAKVAGATVQILKKPTGAFGALLRGAAAKRKLGTDKKVGEEVKLEKIRS SVNLPFHSFMPRNEPPKPVVEEPIVSEISHPEESLAVPATGSSLQDIIMLDDDSDMEQDTRIGEPERDDSKPTNVNRDDISSGTALETDKVEEPVSLSDL STSSQKRFQSSNQNRRTAEGKKSGESSSVLKLKPFDYTAALRFGEGPTEKLKVGNDKNQRDVRVSVGKIKSSPGAPVQKDDETGEFREGRRRQAFPASGN RSATFR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35910			Polynucleotidyl transferase, r...		Potri.019G038701 [exp]	0	1
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	1.41	0.8864
AT3G04820			Pseudouridine synthase family ...		Potri.005G051400 [exp]	4.58	0.8456
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G178000 [exp]	4.89	0.8565
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.010G212100 [exp]	4.89	0.8592
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018400 [exp]	5.47	0.8206
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G013000 [exp]	6.32	0.8334
AT4G19610			nucleotide binding;nucleic aci...		Potri.003G149600 [exp]	7.93	0.8168
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	10.39	0.8481
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	11.00	0.8308
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.001G215700 [exp]	11.74	0.7927

Compare expression of checked genes

Potri.019G038701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.