Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03770 933 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 486 / 4e-161 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 472 / 6e-156 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 448 / 9e-147 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 326 / 9e-101 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 195 / 2e-51 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G30570 177 / 6e-46 HERK2 hercules receptor kinase 2 (.1) AT5G54380 175 / 2e-45 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 174 / 6e-45 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 173 / 1e-44 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G064300 [exp] 1216 / 0 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 771 / 0 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 545 / 0 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G333300 [exp] 516 / 5e-173 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 479 / 2e-158 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 479 / 2e-158 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G164700 [exp] 188 / 8e-50 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.009G120400 [exp] 184 / 3e-48 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.001G467000 [exp] 184 / 3e-48 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005689 [exp] 892 / 0 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 877 / 0 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 677 / 0 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 674 / 0 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035225 [exp] 518 / 2e-173 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032058 [exp] 511 / 1e-170 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 490 / 3e-162 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 473 / 5e-156 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 437 / 8e-143 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030785 [exp] 436 / 2e-142 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G039000.1 pacid=42774574 polypeptide=Potri.019G039000.1.p locus=Potri.019G039000 ID=Potri.019G039000.1.v4.1 annot-version=v4.1 ATGGCTAAGGCATTCCAATGTTCTGCAATCCTACTTTGCGTTGTCCTTGTGCTTTTAATTAGTGGTTCAGAGCAATTACAATCCTCCCAGGGTGAAACCC TTTTAAGAATTCAGCGGCTTTTGAACTATCCATCTGCTTTAAGCAGTTGGAATAGCACCACTGACTTCTGCAATACTGAACCAAATGCTTCTGTAACTGT GGTATGCTATGAGAACAGCATAACACAGCTGCATATTATTGGCAACAAGGGAACTCCTCTTTTGCCTAGAAACTTTTCAATTGATTCCTTTGTCACAACG CTTGTTGGTCTGCCAAACTTGAAAGTGTTGACATTGGTTTCTCTTGGTTTATGGGGTCCCTTGCCTGGTAAAATTGCACGTCTGTCTTCATTGGAAATAC TTAATGTGAGTTCAAATTTCCTATACGATGCTGTTCCTCAAGAAATTTCATCACTCGCTGCCCTCCAATCACTGGTTCTTGACGATAATATGTTTGCTGA TGAGGTGCCAAATTGGATCGGTTCACTTCCAGTTTTGTCTGTCTTGAGTCTCAAGAAGAATATGCTCAATGGTTCATTGCCAGATTCATTGAGTAATTTG GATAATCTTAGAGTTCTAGTGCTTTCGCATAACTACTTCAGAGGAGAAGTACCTGATCTTAGCAGTTTGACAAACCTTCAAGTGCTTGATTTGGAAGATA ATGCTCTTGGACCGCAGTTTCCTCTGCTTGGAAACAAGTTAATTTCTCTTGTGTTGAGCAAGAACAAGTTCAGGGATGGCCTTCCTGCTGAAGTGACCTC CTATTATCAGCTTCAACGGCTAGATCTCTCAAGTAATAAATTTGTGGGACCATTTCCACAATCATTATTGTCATTGCCTTCAGTAACTTACTTGAATGTT GCAGACAACAAGTTCACAGGGATGCTTTTCGAAAACCAGTCTTGCAGTGCTGACCTTGAGTTTGTGGATCTGTCCTCAAATCTTATGACTGGACAACTGC CAAATTGTCTTCTGCAAGACTCCAAGAGAAAGGTCTTGTATGCCGCGAACTGTCTGGCAACCGGTGATGAAAACCAACATCCTATTTCCCTCTGTCGTAA TGAAGCATTAGCTGTTGGGATTTTGCCCCAGAGAAAGAAAAGGAAAGCTTCTAAAGAAACTATTGCATTCGGTGTCATTGGAGGGATTGTTGGAGGAATT GCCCTTGTTGGTTTAATTTACTTGGCCGTCAGAAAGGTGAAATCAAGGAAGACAATCAAGAGACCAAATACTAGACTAATTGCAGAGAACGCGTCAACAG GGTACCCTTCAAATTTGCTCCCAGATGCAAGGTATATTTCTCAAACAATGAAGCTGGGAGCACTCGGCCTTCCACCGTATCGTACTTTTTCACTAGAAGA GGTAGAGGAAGCCACAAACAATTTTGACACATCTGCTTTCATGGGTGAAGGTTCTCAAGGGCAGATGTATAGGGGGCGGCTTAAGGATGGTTCCTTGGTT GCTATCAGATGCTTAAAAATGAAAAGAAGTCATAGTACCCAAAACTTTATGCACCATATAGAGCTGATCTCGAAACTAAGACATCGGCATTTGGTCAGTG CTCTTGGACACTGCTTTGAGTGTTACTTGGATGATTCAAGTGTCAGCAGAATATTCCTAGTTTTTGAATATGTACCAAATGGCACGCTAAGAAGCTGGAT CTCTGGAGGACATGCCTGGCAAAAACTTCAATGGACACACCGTATAGCTGCTGCAATAGGTGTAGCAAAGGGCATCCAATTTTTGCATACAGGGATTGTG CCTGGAGTATATTCAAATAATCTGAAAATAACAGATGTTTTATTGGATCAAAACCTTATTGCAAAAATTAGCAGTTATAACCTACCCTTATTAGCAGAAA ACAAGGGAATGGTTGTCCATGGAACATCATCTGGTGCATCCAAAGATCTTAGCACCAGTGCAAGGATAAATCAAGACCAGAAGGTTGATGTTTATGACTT TGGATTAATATTGCTTGAAATCATTGTGGGGAGATCATTGACATCTAAGAATGAAGTGAGAGTTCTAAAAGATCAGTTGCAAGCAAGCATTACAAGTGAT GATACTGCTCGAAGTAGCATAGTTGATCCAGTTGTGCGAAGATCATGCTCAGATCAATCCCTAAAGACAATGATGGAGATCTGCGTCAGTTGTCTGCTTA AGAACCCTGCAGATAGACCCTCCGTTGAGGATATACTATGGAACTTGCAGTATGCTGCTCAAGTTCAGGATCCGTGGCGGGGAGACTCCCAGAGCAGTGA AGGATCTCCAGTCTCACCTGCCATACGACCGCGTTTACATATTACCATTCATTAG
AA sequence Show only first row Show all	>Potri.019G039000.1 pacid=42774574 polypeptide=Potri.019G039000.1.p locus=Potri.019G039000 ID=Potri.019G039000.1.v4.1 annot-version=v4.1 MAKAFQCSAILLCVVLVLLISGSEQLQSSQGETLLRIQRLLNYPSALSSWNSTTDFCNTEPNASVTVVCYENSITQLHIIGNKGTPLLPRNFSIDSFVTT LVGLPNLKVLTLVSLGLWGPLPGKIARLSSLEILNVSSNFLYDAVPQEISSLAALQSLVLDDNMFADEVPNWIGSLPVLSVLSLKKNMLNGSLPDSLSNL DNLRVLVLSHNYFRGEVPDLSSLTNLQVLDLEDNALGPQFPLLGNKLISLVLSKNKFRDGLPAEVTSYYQLQRLDLSSNKFVGPFPQSLLSLPSVTYLNV ADNKFTGMLFENQSCSADLEFVDLSSNLMTGQLPNCLLQDSKRKVLYAANCLATGDENQHPISLCRNEALAVGILPQRKKRKASKETIAFGVIGGIVGGI ALVGLIYLAVRKVKSRKTIKRPNTRLIAENASTGYPSNLLPDARYISQTMKLGALGLPPYRTFSLEEVEEATNNFDTSAFMGEGSQGQMYRGRLKDGSLV AIRCLKMKRSHSTQNFMHHIELISKLRHRHLVSALGHCFECYLDDSSVSRIFLVFEYVPNGTLRSWISGGHAWQKLQWTHRIAAAIGVAKGIQFLHTGIV PGVYSNNLKITDVLLDQNLIAKISSYNLPLLAENKGMVVHGTSSGASKDLSTSARINQDQKVDVYDFGLILLEIIVGRSLTSKNEVRVLKDQLQASITSD DTARSSIVDPVVRRSCSDQSLKTMMEICVSCLLKNPADRPSVEDILWNLQYAAQVQDPWRGDSQSSEGSPVSPAIRPRLHITIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03770			Leucine-rich repeat protein ki...		Potri.019G039000 [exp]	0	1
AT5G49760			Leucine-rich repeat protein ki...		Potri.003G046450 [exp]	2.64	0.8703
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Potri.004G079200 [exp]	4.24	0.8568	Pt-FRO2.2
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	15.09	0.8435
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	18.08	0.8515
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.006G203500 [exp]	18.73	0.8275
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.013G144300 [exp]	21.21	0.8452	10,Pt-DFL2.2
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.005G138400 [exp]	23.91	0.8251	Pt-ZEAEPOX.2
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	33.04	0.8339
AT3G06868			unknown protein		Potri.008G220700 [exp]	33.46	0.8268
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.005G147900 [exp]	33.76	0.8162

Compare expression of checked genes

Potri.019G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.