Plant FIBer expression Database

Potri.019G039300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28760 321 / 7e-107 Uncharacterized conserved protein (DUF2215) (.1)
AT5G67610 183 / 2e-53 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2)
AT3G49840 171 / 4e-49 Uncharacterized conserved protein (DUF2215) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G064800
[exp]
526 / 0 AT1G28760 416 / 2e-141 Uncharacterized conserved protein (DUF2215) (.1)
Potri.007G005500
[exp]
216 / 7e-66 AT5G67610 400 / 1e-135 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034420
[exp]
378 / 8e-129 AT1G28760 413 / 8e-141 Uncharacterized conserved protein (DUF2215) (.1)
Lus10019140
[exp]
248 / 4e-78 AT5G67610 320 / 6e-105 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2)
Lus10019263
[exp]
209 / 4e-63 AT5G67610 441 / 2e-151 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2)
Lus10011548
[exp]
207 / 2e-59 AT4G37670 763 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10225 NEMP NEMP family
Representative CDS sequence
>Potri.019G039300.7 pacid=42774189 polypeptide=Potri.019G039300.7.p locus=Potri.019G039300 ID=Potri.019G039300.7.v4.1 annot-version=v4.1
ATGGGCTCCTCTTCTCCTTCTCTTACCCTTCTTTACTCTTTGATATTTGCCTCCTCTGTGTTCCTCTCACGTGCCACTCTCAAAGTTCTTGACCCTGAGA
ATCCAGCTCTGGATGTCACCCCGTCTCGCTTGCATGGGCATGTGTTTAGCCGTGATGTTTTCTTTTGTGAACGAGTTAAAGTTTCTGGTCACTCGAGATG
GAAACTCAGTAGTTATGCTAGTTCATTTCGAGTTACTTTGGCTCCATCTGCAGTAATACCGGAGAGATTGCATAGCAAAATTCAGGTTTGCTTTCACCGG
AATGCTTCCCTTGGATTATGCCAGTGTGAAAAGGATGATTGGAGGGCTGTTCAGAAGGGGCTGTGGAGAACTGCCATGTCTCCTTATGAGGAGAGATATG
TTGATGTAAAGTTCGTTGGTGATACTTCTGGATCTGTCTCAATCGCTGTTGATGAAGATTTACAGCAATGGCGCCTCATGTGTCTAGCAGCTGGATTTGT
TTTACTATTGCTGGCATCAATTGTCAGCAGTTGGGTTCCTTTTTATTATAGCACTTCAATGGCTATTGGGGTTTTTCTGGTCATTATATTCCTTCTTTTT
CAGGGAATGAAATTGCTGCCAACTGGAAGGAAAAACTTTTTCTATCTTTCCATATATGGATCAGTGCTTGGAGCTGGCACTTTTGTTTTACATCAAACTT
CAACTCTGGTAAATTCGATTCTTGTCAATTTTGGGCTGAGTGAAGAAATGCACTATCCAGTCTACATATTTGTGTTAGTAGGGATTGTTCTTGCAGGAGC
TGGTTTGGGGTACTGGATGGTGAGGAAATTTGTAATCTCCAAGGATGGGAGCGTGGATGATGAAGTAGCTCAGTTTGTTAAATGGGCAACACGCATTATT
GCATCCACCTTTATTTTCCAGAGCACTTTTGATACTCCTTTAGCAATGGCTGCCTTGGTTTCTTCTTGGGCAATCTGTACTCTTATTTTAAAGTGGTGGT
ATCGAATGAGGGACCACATGCGTGTTGCAGCAGCAGCAGCAACAACAACAACAACGGAGCACGAGTAA
AA sequence
>Potri.019G039300.7 pacid=42774189 polypeptide=Potri.019G039300.7.p locus=Potri.019G039300 ID=Potri.019G039300.7.v4.1 annot-version=v4.1
MGSSSPSLTLLYSLIFASSVFLSRATLKVLDPENPALDVTPSRLHGHVFSRDVFFCERVKVSGHSRWKLSSYASSFRVTLAPSAVIPERLHSKIQVCFHR
NASLGLCQCEKDDWRAVQKGLWRTAMSPYEERYVDVKFVGDTSGSVSIAVDEDLQQWRLMCLAAGFVLLLLASIVSSWVPFYYSTSMAIGVFLVIIFLLF
QGMKLLPTGRKNFFYLSIYGSVLGAGTFVLHQTSTLVNSILVNFGLSEEMHYPVYIFVLVGIVLAGAGLGYWMVRKFVISKDGSVDDEVAQFVKWATRII
ASTFIFQSTFDTPLAMAALVSSWAICTLILKWWYRMRDHMRVAAAAATTTTTEHE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28760 Uncharacterized conserved prot... Potri.019G039300
[exp]
0 1
AT3G14470 NB-ARC domain-containing disea... Potri.018G003502
[exp]
9.16 0.7454
AT2G32940 AGO6 ARGONAUTE 6, Argonaute family ... Potri.014G159400
[exp]
12.96 0.7215 AGO902
AT5G17680 disease resistance protein (TI... Potri.013G098550
[exp]
15.00 0.7290
AT1G63350 Disease resistance protein (CC... Potri.018G145534
[exp]
15.49 0.6921
AT2G27450 CPA, ATNLP1, NL... nitrilase-like protein 1 (.1.2... Potri.009G162600
[exp]
23.49 0.7083
AT4G27190 NB-ARC domain-containing disea... Potri.018G145556
[exp]
27.96 0.6690
Potri.003G039551
[exp]
29.69 0.7002
AT3G02850 SKOR STELAR K+ outward rectifier, S... Potri.012G043000
[exp]
38.34 0.6728 Pt-SKOR.2
AT5G07280 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCES... Potri.012G139000
[exp]
42.19 0.6641 EMS1.2
AT1G12150 Plant protein of unknown funct... Potri.006G004100
[exp]
44.89 0.6653

Potri.019G039300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.