Plant FIBer expression Database

Potri.019G039401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G064800
[exp]
0 / 1 AT1G28760 416 / 2e-141 Uncharacterized conserved protein (DUF2215) (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G039401.1 pacid=42774069 polypeptide=Potri.019G039401.1.p locus=Potri.019G039401 ID=Potri.019G039401.1.v4.1 annot-version=v4.1
ATGAGCCCCCAGAGGAAGATGCGCAACAGTCCAAAAAGCCCTTCTGCTAGGACCAACTCCCCTGTTAAAGGTTTGGTATCACCATCTTCTCATTCGGCAA
CAGTAATAAACAGGATTACTACTCAACCTTCCACAAGACACCAAAGCAAAAGAAGTTCACAAAGAAACAGCGGGAGGATTTCACCAGGGAATCAACACAC
CAAGCTGTGGCCCAATGGGGAGCGTCACCGGAAGTCACCAATTGGATCATCAAGAATGCTGATCGGATTCAACTCTTCCAAGTGA
AA sequence
>Potri.019G039401.1 pacid=42774069 polypeptide=Potri.019G039401.1.p locus=Potri.019G039401 ID=Potri.019G039401.1.v4.1 annot-version=v4.1
MSPQRKMRNSPKSPSARTNSPVKGLVSPSSHSATVINRITTQPSTRHQSKRSSQRNSGRISPGNQHTKLWPNGERHRKSPIGSSRMLIGFNSSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28760 Uncharacterized conserved prot... Potri.019G039401
[exp]
0 1
AT1G15780 unknown protein Potri.003G026510
[exp]
8.88 0.8354
AT5G36930 Disease resistance protein (TI... Potri.003G014200
[exp]
12.84 0.8098
Potri.011G093266
[exp]
21.90 0.7766
AT2G32970 unknown protein Potri.002G224900
[exp]
22.62 0.7465
AT2G16390 DMS1, CHR35, DR... DEFECTIVE IN RNA-DIRECTED DNA ... Potri.004G159000
[exp]
28.16 0.7815
AT5G61580 PFK4 phosphofructokinase 4 (.1.2) Potri.001G079450
[exp]
35.66 0.7530
AT4G27220 NB-ARC domain-containing disea... Potri.019G014320
[exp]
38.07 0.7832
AT5G60600 HDS, ISPG, CSB3... CONSTITUTIVE SUBTILISIN 3, CHL... Potri.004G210400
[exp]
38.39 0.7603
Potri.019G087800
[exp]
44.45 0.7298
AT1G56260 MDO1 MERISTEM DISORGANIZATION 1, un... Potri.005G021800
[exp]
44.72 0.7069

Potri.019G039401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.