Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03740 618 / 0 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT5G21010 527 / 0 ATBPM5 BTB-POZ and MATH domain 5 (.1) AT3G43700 509 / 2e-180 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT3G06190 430 / 2e-149 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 427 / 4e-148 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT2G39760 414 / 4e-143 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT5G19330 78 / 3e-15 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 69 / 2e-12 ABAP1 ARMADILLO BTB protein 1 (.1) AT1G55760 61 / 4e-10 BTB/POZ domain-containing protein (.1) AT4G08455 57 / 6e-09 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G194200 [exp] 613 / 0 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.009G156500 [exp] 608 / 0 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.010G029500 [exp] 437 / 4e-152 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 426 / 9e-148 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G059600 [exp] 423 / 1e-146 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G199200 [exp] 414 / 4e-143 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.001G184200 [exp] 364 / 1e-125 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.002G052700 [exp] 74 / 6e-14 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G210000 [exp] 74 / 6e-14 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003365 [exp] 591 / 0 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 591 / 0 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10021946 [exp] 434 / 4e-151 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10004701 [exp] 416 / 1e-143 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10040267 [exp] 416 / 2e-143 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10041235 [exp] 197 / 8e-61 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10022039 [exp] 78 / 5e-15 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10010527 [exp] 77 / 7e-15 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10034070 [exp] 77 / 7e-15 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 77 / 1e-14 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.019G039500.1 pacid=42774040 polypeptide=Potri.019G039500.1.p locus=Potri.019G039500 ID=Potri.019G039500.1.v4.1 annot-version=v4.1 ATGCCACCCACCACCTCGTCACCACCGGCATGCACATCCCCGACCTCTTCGCTCTCCGTAACAGAAACAGTAAACGGGTCCCACAAATTCACAATTCAAG GCTATTCATTAGCCAAAGGAATTGGTGTAGGGAAACACATAGCTAGCGAGACTTTCACTGTTGGTGGTTATCAGTGGGCAATTTATTTCTACCCAGATGG CAAAAACCCTGAAGACCATTCCTCTTATGTCTCTGTTTTCATCGCTCTTGCTAGCGAAGGCACCGATGTTCGTGCCCTTTTCGAGCTCACCTTGATTGAT CAGAGTGGTAAAGGCAAACATAAAGTTCATAGTCACTTTGATCGCTCCCTCGAGAGTGGACCCTATACCCTCAAGTATCGCGGCAGCATGTGGGGTTACA AGCGATTCTTCAGACGAGCAATGCTTGAATCGTCAGATTTTCTAAAAGATGATTGCTTGAAAATTCACTGCACTGTTGGTGTTGTGGTTTCCGCAACTGA TTGCTCGAGATTGCACTCTATAAAGGTCCCTGAATCAGATATTGGAGACCATTTTGGTATGCTATTGGAGAATGAAGATTGTTCTGATATCATTTTCAGT GTGCAAGGGCAAAAGTTTCATGCTCACAAGTTGGTATTGGTTGCTCGGTCTCCTGTATTCGAAAATGAACTTCTTGATGCAATGGAGGAAGATAACAGCG AAATAGTTATTTCAGATATAGAACCTAAGGTGTTCAAGGCTTTGCTACATTTCATATACAAAGATGATCTAATTGAAGATGAGGAACTTTCTGCTTCTAG TTCAACTTCTGTGATATCTGTGTTTGACACATTAACTGCAAAATTATTGGAGGCAGCAGACAGATATGACTTACCTAGACTCAGACTTATGTGTGAGGCT GTACTCTGCAAGGATATATCTGTGAGTTCTGTTGCCAAGATTCTTGCCCTGGCTGATCGATACCATGCTATGGATTTGAAGTCTGTTTGCCTAAAATTTT CTGCTGAAAATCTTGTAGCTGTTGTGCAGTCTGATGGTTTTGAGTATCTGAAAGAGAACTGTCCACTACTGCAATCTGAGCTCCTAAAAACCGTGGCAGG ATGTGAGGAGGATGTCAGTGGAGGTGGAAAGAGCCGAAGTGTTTGGGCGCAGTTCTCAGATGGAGGTGATACAAATGATAGGAGTGTCAGGCAACCATGG GAAAATGGAGGGGAAAGGAGCCAAAACTTGTGGGCTCAACCTGAAAATAGCAATGGAAGGAGTCCTAGGCAAGAAGAATGA
AA sequence Show only first row Show all	>Potri.019G039500.1 pacid=42774040 polypeptide=Potri.019G039500.1.p locus=Potri.019G039500 ID=Potri.019G039500.1.v4.1 annot-version=v4.1 MPPTTSSPPACTSPTSSLSVTETVNGSHKFTIQGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDHSSYVSVFIALASEGTDVRALFELTLID QSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLESSDFLKDDCLKIHCTVGVVVSATDCSRLHSIKVPESDIGDHFGMLLENEDCSDIIFS VQGQKFHAHKLVLVARSPVFENELLDAMEEDNSEIVISDIEPKVFKALLHFIYKDDLIEDEELSASSSTSVISVFDTLTAKLLEAADRYDLPRLRLMCEA VLCKDISVSSVAKILALADRYHAMDLKSVCLKFSAENLVAVVQSDGFEYLKENCPLLQSELLKTVAGCEEDVSGGGKSRSVWAQFSDGGDTNDRSVRQPW ENGGERSQNLWAQPENSNGRSPRQEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.019G039500 [exp]	0	1
					Potri.003G084300 [exp]	5.47	0.8361
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Potri.005G212900 [exp]	6.32	0.8692
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Potri.017G041000 [exp]	7.28	0.8786
AT4G28088			Low temperature and salt respo...		Potri.018G105100 [exp]	11.74	0.8215
AT3G49142			Tetratricopeptide repeat (TPR)...		Potri.005G005700 [exp]	21.63	0.8513
AT5G46150			LEM3 (ligand-effect modulator ...		Potri.011G082100 [exp]	23.87	0.7980
					Potri.006G273732 [exp]	24.53	0.8503
AT1G04290			Thioesterase superfamily prote...		Potri.004G134132 [exp]	28.56	0.7640
AT5G21140		EMB1379	embryo defective 1379 (.1)		Potri.004G195600 [exp]	32.61	0.7724
AT5G27620		CYCH;1	cyclin H;1 (.1)		Potri.005G027700 [exp]	33.16	0.7391

Compare expression of checked genes

Potri.019G039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.