Plant FIBer expression Database

Potri.019G039900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17900 356 / 7e-120 microfibrillar-associated protein-related (.1)
AT4G08580 355 / 3e-119 microfibrillar-associated protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G065600
[exp]
393 / 2e-134 AT5G17900 392 / 9e-134 microfibrillar-associated protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020319
[exp]
383 / 3e-130 AT4G08580 511 / 1e-180 microfibrillar-associated protein-related (.1)
Lus10005672
[exp]
380 / 2e-129 AT5G17900 505 / 2e-178 microfibrillar-associated protein-related (.1)
Lus10020321
[exp]
372 / 4e-128 AT4G08580 390 / 2e-135 microfibrillar-associated protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06991 MFAP1 Microfibril-associated/Pre-mRNA processing
Representative CDS sequence
>Potri.019G039900.1 pacid=42773758 polypeptide=Potri.019G039900.1.p locus=Potri.019G039900 ID=Potri.019G039900.1.v4.1 annot-version=v4.1
ATGTCGGTTACAGCAGGTGTTAGTGATACAGCGTTAGCAGTTAGGGATAAGCTTAGGGGTAAAATTGGACAGACCAAGGTTAAAAGGTATTGGCCTGGTA
AAGCACCGGAGTGGGCAGATGATGCGGAAGAAGATGGAGATATTAGGATGGCTAGGGTGGCTTCCTTGGAGAAAGCTTTCCCCAGCAGGGACGATTCGGA
TGTTGTTTCCAGGAAAGATGATCCGAGGCTGCGTCGTCTGGCGGAGACTAGGATTGATAATCGCGATGAAATGAGGGCGGATCATAGGAGGATTCGGCAG
GCTGAAATTATTTCAACGGAGGAGGAAGAGACCCGGAAGCAAGAATGGGCGGATATGGAGGAAGACGACGAGGATGCGTTGGAGGAAAGAAGGAGAAGGA
TTAAGGAGAAGTTGCGGCAGAGGGAGCGAGAGGAGGCTGCGCTTCTTCCTGTAGAGGAGGAGGAGGAGGAGGATGAAGTGGAGGAAGAGGAAGAGGAGTC
GGAGTATGAGACAGATTCTGAGGAGGAAATGACAGGGATGGCTATGGTGAAGCCTGTTTTTGTGCCCAAGTCGGAGAGGGATACTATTGCTGAGCGTGAG
CGGCTTGAGGCTGAAGAACGAGCACTCGAGGATAAGGTGAGGAAGAAATTGGAGGAGAGGAAGGTGGAGACCAAGCAAATATTGGTTGAGGAGATAAAGA
AAGAGGAAATGATTCAGAAGAATCTGGAGATGGAGGCAAATATTGCTGATGTGGATACCGATGATGAAATGAATGAGGCAGAGGAGTACGAGGCTTGGAA
GGTCAGAGAGATTGCAAGGATTAAGAGGGATAGGGAGGACCGTGAGGCAATGGTGAAGGAAAGGGAAGAGATTGAGAGGGTGCGGAACATGACTGAGGAA
GAGAGGAGAGAGTGGGAGAGGAAGAATCCGAAACCTGCTGCACCACCAAAGCAGAAGTGGAGGTTTATGCAGAAATATTACCACAAGGGTGCTTTCTTCC
AGGATGAGCCCGATGACCGAGCAGCAACTGTTGGATCAGATGGCATTTTCAAACGTGATTTCTCAGCTCCGACTGGAGAAGATAACATGGATAAAACCAT
ATTGCCCAAAGTTATGCAAGTCAAACACTTTGGTCGTAGTGGAAGAACAAAATGGACCCATCTTGTCAATGAGGATACCACTGATTGGAACAATCCGTGG
ACATACAATGATCCTTTGCGGGCAAAGTACAATGCAAAAATGGCTGGAATGAATGCTACTATAGCTAAACCCAAAGGAAGCAAAAAGTTGAAGGATTGGG
AATCCCGGTAA
AA sequence
>Potri.019G039900.1 pacid=42773758 polypeptide=Potri.019G039900.1.p locus=Potri.019G039900 ID=Potri.019G039900.1.v4.1 annot-version=v4.1
MSVTAGVSDTALAVRDKLRGKIGQTKVKRYWPGKAPEWADDAEEDGDIRMARVASLEKAFPSRDDSDVVSRKDDPRLRRLAETRIDNRDEMRADHRRIRQ
AEIISTEEEETRKQEWADMEEDDEDALEERRRRIKEKLRQREREEAALLPVEEEEEEDEVEEEEEESEYETDSEEEMTGMAMVKPVFVPKSERDTIAERE
RLEAEERALEDKVRKKLEERKVETKQILVEEIKKEEMIQKNLEMEANIADVDTDDEMNEAEEYEAWKVREIARIKRDREDREAMVKEREEIERVRNMTEE
ERREWERKNPKPAAPPKQKWRFMQKYYHKGAFFQDEPDDRAATVGSDGIFKRDFSAPTGEDNMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPW
TYNDPLRAKYNAKMAGMNATIAKPKGSKKLKDWESR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17900 microfibrillar-associated prot... Potri.019G039900
[exp]
0 1
AT4G13110 BSD domain-containing protein ... Potri.008G199100
[exp]
3.31 0.8222
AT1G56290 CwfJ-like family protein (.1) Potri.001G415900
[exp]
3.60 0.8647
AT5G38720 unknown protein Potri.017G108700
[exp]
3.87 0.8508
AT1G32130 HNI9, ATIWS1 HIGH NITROGEN INSENSITIVE 9, A... Potri.001G135900
[exp]
5.65 0.8332
AT1G65280 DNAJ heat shock N-terminal dom... Potri.019G083700
[exp]
7.07 0.8531
AT3G02760 Class II aaRS and biotin synth... Potri.019G071400
[exp]
7.34 0.8276
AT1G32130 HNI9, ATIWS1 HIGH NITROGEN INSENSITIVE 9, A... Potri.003G097700
[exp]
7.74 0.8073
AT4G00830 LIF2 LHP1-Interacting Factor 2, RNA... Potri.014G104500
[exp]
7.74 0.8166
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Potri.008G055300
[exp]
8.36 0.8301
AT4G32610 copper ion binding (.1) Potri.006G246300
[exp]
8.83 0.7333

Potri.019G039900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.