Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03710 1196 / 0 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT5G14580 424 / 6e-133 polyribonucleotide nucleotidyltransferase, putative (.1) AT2G47220 149 / 5e-38 ATDUF5 DOMAIN OF UNKNOWN FUNCTION 724 5 (.1) AT3G46210 63 / 2e-10 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT3G61620 52 / 5e-07 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT3G11964 47 / 8e-05 RNA binding;RNA binding (.1) AT4G29060 44 / 0.0008 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065700 [exp] 1530 / 0 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.001G347900 [exp] 395 / 3e-122 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.014G094300 [exp] 66 / 1e-11 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.018G043600 [exp] 61 / 4e-10 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.018G083900 [exp] 46 / 0.0001 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Potri.014G148500 [exp] 43 / 0.0007 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013636 [exp] 1212 / 0 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001332 [exp] 995 / 0 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 416 / 1e-130 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10022250 [exp] 414 / 2e-129 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001331 [exp] 184 / 4e-53 AT3G03710 161 / 1e-45 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10009221 [exp] 59 / 4e-09 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10037991 [exp] 52 / 1e-06 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10043229 [exp] 49 / 2e-05 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10011108 [exp] 49 / 2e-05 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10016216 [exp] 49 / 3e-05 AT3G11964 2151 / 0.0 RNA binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain CL0329 [poplar] [flax] S5 PF01138 [poplar] [flax] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [poplar] [flax] PF03725 [poplar] [flax] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Potri.019G040100.13 pacid=42774274 polypeptide=Potri.019G040100.13.p locus=Potri.019G040100 ID=Potri.019G040100.13.v4.1 annot-version=v4.1 ATGCTTGCGAATCCTAGCACCAGTACTCTCCATCACAGACCTAATTACACACACAACCCTCCATGTTCACTCTCTAATCATCGCTGCAAGCTCTCTCTCT CCCCAAATTGCCCTCGCTTCTCCAATTCTGCAAAATCCAACTTTTCTTCGCTTTCTCTGCTTCTATCAAGAAGAAAGCGTGAAAGGTTGTTTACTGTTGT CAATGCTTTCGAGGAAACTTCTGTGGCACATGACGCCCCTCAGTCTTTGCCTCAGCCTTTTTCTGTCAAAATCCCCGTCGGTGACAGACATATATTGGTT GAGACGGGTCATATTGGGAGACAAGCTAGTGGTTCTGTCACTGTGACGGATGGGGAAACTATTGTCTATACATCTGTTTGTTTGGATGATGTTCCTAGTG AGCCTTCTGATTTTTATCCTCTATCTGTAAATTATCAAGAGCGATTTTCTGCAGCAGGTCGAACTAGTGGAGGATTTTTCAAACGAGAAGGGAAGTTAAA AGATCATGAGGTTCTTATTTGTAGATTGATAGACAGGCCTTTGCGCCCAACCATGTTCAAGGGCTTCTACCATGAAACCCAGATACTATCTTGGGTTTTG AGCTATGATGGTTTGCATTCTCCTGATTCTTTGGCTGTCACAGCAGCTGGAATAGCTGTAGCTCTTTCAGAAGTACCAAATACAAAAGTAATTGCAGGAG TTCGAGTTGGCCTTGTTGACAATAAGTTTATTGTGAATCCAACAACCAAGGAGATGGAAGAGTCAGAATTGGATTTATTGCTGGCTGGTACAGACAGTGC AATATTTATGATAGAGGGTTATTGTAATTTTCTTACAGAAGAAAAGTTGCTTGATGCAGTACAAATTGGCCAGGATGCAGTGCGGGCAATTTGCAATGAG GTGGGTGTTTTGGTGAAGAAGTGTGGGAAAGCTAAAATGCTTGATGCAATCAAATTACCTCCTGCTGAGCTGTATAAGCATGTGGAGGAAATTGCTGGTG ATGAATTGGTGAAAATATTGCAAATTACAAGCAAAGTACCAAGAAGAAAAGCCCTTGCATCACTGGAAGAAAAGGTGCTTAGTATACTTACAGAAAAGGG ATATGTAAGCAAGGATGAAAGATTTGGAACCCCTGAAACAGTTGCAGACTTGCTAGAGGTTGAAGATGAGGATGAGGAAATTGTTGTAGATGGTGAAGTG GATGAAGGTGATGTCCACATAAAGCCAATTGGACGCAAATTCTCTCCCTTGTTGTTTTCTGAGGTAGATGTGAAGCTGGTATTTAAAGAAGTTACATCCA AATTCTTGCGGAAACGTATTGTTGAGGGAGGAAAAAGAAGCGACGGGAGAACTCCAGACAGGATACGTCCAATTGATTCCAGATGTGGAATACTTCCCAG AGCACACGGAAGTGCTCTTTTCACACGTGGGGAAACACAGTCACTAGCAGTTGTTACACTTGGTGATAAACAAATGGCACAAAGAGTAGACAACCTTGTG GACGAAGAGGAATTCAAGAGGTTCTATCTACAGTACCTGTTTCCTCCATCATGTGTTGGAGAAGTGGGCCGGATAGGAGCACCTAGTAGAAGAGAAATCG GCCATGGAATGCTCGTGGAGAGAGCTCTCAAACCTATATTGCCTTCTGATGATGATTTTCCTTACACAGTACGGGTTGAGAGTACAATCACAGAAAGCAA TGGCTCCTCAAGCATGGCCTCTGTTTGTGGAGGCTGCCTGGCATTACAAGATGCTGGTGTTCCTGTAAAATGCATGATTGCTGGGATTGCGATGGGTATG GTTCTTGACACTGAGGAATTTGGGGGTGATGGAACGCCCCTCATTCTGTCTGACATAACTGGATCAGAAGATGCTTCTGGAGACATGGATTTCAAGGTTG CTGGAAATGAAGATGGAATAACTGCATTTCAGATGGACATAAAGGTTGGAGGAATCACCTTACCTGTTATGAGAAAGGCATTGCTACAAGCAAGGGATGG CCGAAAGCATATTCTTGCTGAAATGTTGAAATGCTCACCTTTCCCTTCCGAAAGGCTTTCTAAGTATGCCCCATTGATTCACATTATGAAGGTCAATCCA AAGAAAGTTAACATCATCATTGGTTCTGGTGGGAAGAAGGTGAAGAGTATAATAGAAGAAACTGGAGTTGAGGCCATTGACACACGAGAAGATGGAATTG TAAAAATTACTGCAAAGGATTTGTCAAGTATAGAAAAGTCCAAATCCATTATCAATCAGCTAACAATGGTTCCAAATGTCGGTGATATCTACAGGAACTG TGAGATCAAATCCGTAGCTCCTTATGGAGTTTTTGTTGAGATAGCCCCAGGGCGTGAGGGACTTTGCCATATTAGTGAACTAACTTCGAACTGGTTGCCA AAGGCTGAAGACGTTTTCAAAGTTGGAGACCGTGTTGATGTTAAACTAATTAAGGTAAATGAAAAGGGACAACTTCGACTTAGTCGCAAAGCATTGCTTC CTGAAGCCACTCCAGAGAAGTCCAGTGCAGAGCATCATGCAACTGATAAGGCTAGTCCCAGAAGGATTGTGCAAGCACCAAAGGATGGTTTAGGTGGAGA GTACAAGGATAAAGACAGTGCTGTAAATTCCCCAAGAAGTGATTCAATAAAGGATGCTCCAGTTTCAAAAAAGAAAGTTTACAAGGGATTAACCAGTTCT GGCACAGAGGGGCCAAAGAACAGTGTTGCATCTGTCAGTAGCATTGCCAGCAAAGACGAAGGTACTTTAGTGAATGGAGATGCTAAGATTGGATAG
AA sequence Show only first row Show all	>Potri.019G040100.13 pacid=42774274 polypeptide=Potri.019G040100.13.p locus=Potri.019G040100 ID=Potri.019G040100.13.v4.1 annot-version=v4.1 MLANPSTSTLHHRPNYTHNPPCSLSNHRCKLSLSPNCPRFSNSAKSNFSSLSLLLSRRKRERLFTVVNAFEETSVAHDAPQSLPQPFSVKIPVGDRHILV ETGHIGRQASGSVTVTDGETIVYTSVCLDDVPSEPSDFYPLSVNYQERFSAAGRTSGGFFKREGKLKDHEVLICRLIDRPLRPTMFKGFYHETQILSWVL SYDGLHSPDSLAVTAAGIAVALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESELDLLLAGTDSAIFMIEGYCNFLTEEKLLDAVQIGQDAVRAICNE VGVLVKKCGKAKMLDAIKLPPAELYKHVEEIAGDELVKILQITSKVPRRKALASLEEKVLSILTEKGYVSKDERFGTPETVADLLEVEDEDEEIVVDGEV DEGDVHIKPIGRKFSPLLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLV DEEEFKRFYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVERALKPILPSDDDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGM VLDTEEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMRKALLQARDGRKHILAEMLKCSPFPSERLSKYAPLIHIMKVNP KKVNIIIGSGGKKVKSIIEETGVEAIDTREDGIVKITAKDLSSIEKSKSIINQLTMVPNVGDIYRNCEIKSVAPYGVFVEIAPGREGLCHISELTSNWLP KAEDVFKVGDRVDVKLIKVNEKGQLRLSRKALLPEATPEKSSAEHHATDKASPRRIVQAPKDGLGGEYKDKDSAVNSPRSDSIKDAPVSKKKVYKGLTSS GTEGPKNSVASVSSIASKDEGTLVNGDAKIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Potri.019G040100 [exp]	0	1
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Potri.008G172700 [exp]	2.44	0.9604	GATB.1
AT3G32930			unknown protein		Potri.003G216700 [exp]	3.16	0.9436
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	4.89	0.9549
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Potri.012G132500 [exp]	7.61	0.9313	Pt-PGM.4
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.006G180100 [exp]	11.22	0.9492
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Potri.010G014500 [exp]	12.40	0.9460
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.015G020700 [exp]	12.64	0.9388
AT1G03160		FZL	FZO-like (.1.2)		Potri.005G209200 [exp]	16.91	0.9337
AT5G03900			Iron-sulphur cluster biosynthe...		Potri.004G090400 [exp]	17.02	0.9501
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	18.33	0.9453

Compare expression of checked genes

Potri.019G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.