Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17850 392 / 3e-131 Sodium/calcium exchanger family protein (.1) AT5G17860 346 / 4e-113 CAX7 calcium exchanger 7 (.1) AT1G54115 317 / 6e-101 ATCCX4 cation calcium exchanger 4 (.1) AT3G14070 203 / 6e-58 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT1G08960 166 / 7e-45 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065900 [exp] 673 / 0 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.013G065800 [exp] 317 / 1e-101 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 310 / 5e-99 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.003G066900 [exp] 296 / 4e-93 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 174 / 2e-47 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G025100 [exp] 147 / 3e-38 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013634 [exp] 470 / 2e-161 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 442 / 5e-150 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10001330 [exp] 330 / 5e-107 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10013635 [exp] 318 / 4e-102 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10037681 [exp] 293 / 6e-92 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 295 / 9e-88 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10005673 [exp] 276 / 3e-87 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10020318 [exp] 263 / 2e-80 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10015668 [exp] 212 / 9e-64 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10029938 [exp] 159 / 2e-41 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.019G040301.1 pacid=42773732 polypeptide=Potri.019G040301.1.p locus=Potri.019G040301 ID=Potri.019G040301.1.v4.1 annot-version=v4.1 ATGACTACAAAACCAAGTGCTTTTACTTTAAATTACATAATCCATGTGTCTCTCAAGGCTATATTGACTATCTTTACCTTTTCTATTGCAATTTCGAAAT ATTTCCTCTTTTGGGCTAGTCTTCTTTTTCTTTGGCTCCTGGTATTGTTCTATCTGTTTGGGAACACAGCTTCTGAATACTTTTGTTCTTCACTTGAAGA CTTGTCTAAGCTGTTGAATTTGTCTCCTACAATTGTCGGGGTTACCCTCCTTTCACTTGGAAATAGTGCCCCTAATGTTTTTGCTAGTGTGGTGTCTTTT ATGGGTGATGGGACATCAGACTTTGGCTTTAATACAGTATTAGGTGGTGCTTCCTTTGTTACTTGTGTGGTGGTTGGAATCTTAAGCATTTTGGCGAAGC AAGAGGAATTTAGAGTCAACAGGGATGCCTTTGTTAGGGATATTTGCTTCTTCCTTTTAGTTCTTGCATCCTTAATTTTCATTTTGATTTATGGCAAGAT CAACATGTGGGGTGCTATGGGCTTTTTGTTGATGTATATTGTTTATGTGATGGTTGTTTACATTTCACAAGTCCATGGGAATGGTAGTATAAATGAAAGC GAAAGGGATCATAATTCAAGTAATGGAAGTGATTTAAGCATACCAATTTTAAGCAGCATGGAAAAAGGGGAGCACAATTATGTGAAGGAAAGTGGTTTTG AATGTGGTCCTGAAGTAGAAATGAACAAATGTTGCTTTTGCGTAAGATTATCAGCTCCATGTAGTACACTTCTCCGAATCCTTGAGATGCCTCTTTCCTT ACCTAGGAGATTGACAATTCCTGTTGTTTGTGAAAAGAGATGGTCCAAGCCAACCGCAGTTGCTTCAGTGACATTAGCACCAGTTCTCTTATCAACTCTT TGGAACGCCCAAGATGAGTGTGCCACCTTCAACACAATCCTAATAGTAAATGGAATTGGGTTGATGTTCGGAATGACATTTGGGGTTCTTGCATCTGTAA AAATTGAGAATTCAGGTCCACCGAAGAAGTGCTTGCTTCCTTGGCTAGCAGCGGGGTTCTTAATGAGTGTGACATGGAGTTATATTCTAGCTCAGGAACT GGTAGGCTTGTTAGTTTCACTTGGGTATATATTTGGAATTAGTCCTTCTATACTAGGACTAACAGTTCTTTCCTGGGGGAACTCAATTGGTGATTTGATA ACAAATTTGATTTTGGCTGTGAATCGTGGCCCAGAAGGTGCACAAGTTGCTATATCAGGCTGTTATGCAGGTCCCATTTTCAACATCCTTTTCGGTCTGG GATTGTCTCTGTTTGGCTCAGCCTGTTATGCGTACCCATCACGTGTTGTGATCCCAAAAGATCCATATCTATTGGAGACAGTAGGCTTTTTAGTAGGTGG CCTGCTTTGGGCACTTGTTGTTTTACCCGGGAGAAATATGAGGCTTGATTGGGTGCTGGGAGGAGGACTCTTAGCTATATACTTGATGTCTGCTTCTTCG AGGGTAATTCAAACTTTTAGCTCTCCGATGTGA
AA sequence Show only first row Show all	>Potri.019G040301.1 pacid=42773732 polypeptide=Potri.019G040301.1.p locus=Potri.019G040301 ID=Potri.019G040301.1.v4.1 annot-version=v4.1 MTTKPSAFTLNYIIHVSLKAILTIFTFSIAISKYFLFWASLLFLWLLVLFYLFGNTASEYFCSSLEDLSKLLNLSPTIVGVTLLSLGNSAPNVFASVVSF MGDGTSDFGFNTVLGGASFVTCVVVGILSILAKQEEFRVNRDAFVRDICFFLLVLASLIFILIYGKINMWGAMGFLLMYIVYVMVVYISQVHGNGSINES ERDHNSSNGSDLSIPILSSMEKGEHNYVKESGFECGPEVEMNKCCFCVRLSAPCSTLLRILEMPLSLPRRLTIPVVCEKRWSKPTAVASVTLAPVLLSTL WNAQDECATFNTILIVNGIGLMFGMTFGVLASVKIENSGPPKKCLLPWLAAGFLMSVTWSYILAQELVGLLVSLGYIFGISPSILGLTVLSWGNSIGDLI TNLILAVNRGPEGAQVAISGCYAGPIFNILFGLGLSLFGSACYAYPSRVVIPKDPYLLETVGFLVGGLLWALVVLPGRNMRLDWVLGGGLLAIYLMSASS RVIQTFSSPM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17850			Sodium/calcium exchanger famil...		Potri.019G040301 [exp]	0	1
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070000 [exp]	14.49	0.6526
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.017G125500 [exp]	15.32	0.6577
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	17.54	0.6664
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Potri.005G173100 [exp]	18.33	0.6918	SDG944,SDG37.1
AT2G23300			Leucine-rich repeat protein ki...		Potri.007G048800 [exp]	27.16	0.6073
AT3G25640			Protein of unknown function, D...		Potri.010G131600 [exp]	27.34	0.6198
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Potri.014G083800 [exp]	27.74	0.6280
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	28.72	0.6863
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.018G038300 [exp]	40.24	0.6177
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145548 [exp]	40.98	0.6114

Compare expression of checked genes

Potri.019G040301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.