Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17840 146 / 2e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT3G47650 38 / 0.0008 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066000 [exp] 229 / 7e-78 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G028500 [exp] 41 / 8e-05 AT3G47650 120 / 4e-36 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G068300 [exp] 39 / 0.0004 AT3G47650 140 / 9e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G016400 [exp] 39 / 0.0005 AT2G24860 165 / 5e-53 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.006G266800 [exp] 39 / 0.0005 AT2G24860 167 / 3e-54 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001328 [exp] 183 / 1e-59 AT5G17840 143 / 3e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10013632 [exp] 143 / 3e-43 AT5G17840 111 / 9e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 40 / 0.0001 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10005719 [exp] 38 / 0.0008 AT3G47650 130 / 4e-40 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G040400.2 pacid=42773770 polypeptide=Potri.019G040400.2.p locus=Potri.019G040400 ID=Potri.019G040400.2.v4.1 annot-version=v4.1 ATGGGTTCTACAATTAGAATTGGGTCATCAATTCTCTTGCCCATTTCTTCTTCTTCTTCTTCACCAAAATCATCAAATATACTGAGGAATGATAAGATTG GATATGGGTTTCAATTCAGTGGAAATGGGTGCATCACAAAAATCTCTGCCATCACTCCTAATGGCTCTGTTTTTCCTTCTGCTTCTTCTCATGGGGAGTC AAGTTCAATGGGAGATGTGCATAGAAGAAGAAGCAGTCTTGAATCTCTGTTTTGTTACGATAAGCCTATACCAGAGGAGAGAATTGAGGAGCCCGTAGGT GTTTCGTTGGCTGCAAAAGTAATTGGAGATAATCCTCGGTGCACTGATTGCCAAGCCAAAGGCGCTGTTCTCTGCACCACATGCTCTGGTTCTGGCTTAT ATGTTGACTCTATAATGGAAAGCCAGGGCATCATTGTCAAGGTCAGGTGCTTAGGTTGTGGTGGGACAGGGAACATCATGTGCTCAGAATGTGGTGGCCT AGGTCATCTTGGACCCAAGTAA
AA sequence Show only first row Show all	>Potri.019G040400.2 pacid=42773770 polypeptide=Potri.019G040400.2.p locus=Potri.019G040400 ID=Potri.019G040400.2.v4.1 annot-version=v4.1 MGSTIRIGSSILLPISSSSSSPKSSNILRNDKIGYGFQFSGNGCITKISAITPNGSVFPSASSHGESSSMGDVHRRRSSLESLFCYDKPIPEERIEEPVG VSLAAKVIGDNPRCTDCQAKGAVLCTTCSGSGLYVDSIMESQGIIVKVRCLGCGGTGNIMCSECGGLGHLGPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.019G040400 [exp]	0	1
AT1G45000			AAA-type ATPase family protein...		Potri.009G120500 [exp]	5.47	0.7959
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.002G259900 [exp]	5.65	0.8204
AT5G10770			Eukaryotic aspartyl protease f...		Potri.016G000600 [exp]	10.39	0.8151
AT2G24395			chaperone protein dnaJ-related...		Potri.006G278250 [exp]	12.00	0.8253
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Potri.010G002000 [exp]	20.14	0.7894	Pt-PDK.1
AT3G06868			unknown protein		Potri.008G220700 [exp]	20.63	0.8166
AT1G67050			unknown protein		Potri.017G115700 [exp]	31.32	0.7741
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.007G034200 [exp]	34.78	0.7018
AT5G09680		RLF	reduced lateral root formation...		Potri.001G263800 [exp]	37.70	0.7177
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.015G132200 [exp]	38.47	0.7733	Pt-ERL1.1

Compare expression of checked genes

Potri.019G040400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.