Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04440 423 / 5e-145 Plasma-membrane choline transporter family protein (.1) AT3G03700 422 / 9e-145 Plasma-membrane choline transporter family protein (.1) AT5G17830 270 / 1e-85 Plasma-membrane choline transporter family protein (.1) AT5G13760 219 / 6e-65 Plasma-membrane choline transporter family protein (.1) AT1G25500 78 / 3e-15 Plasma-membrane choline transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066100 [exp] 667 / 0 AT3G03700 436 / 7e-151 Plasma-membrane choline transporter family protein (.1) Potri.009G056700 [exp] 224 / 2e-67 AT5G13760 639 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.001G261900 [exp] 219 / 4e-65 AT5G13760 640 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.008G118200 [exp] 91 / 2e-19 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.010G128100 [exp] 91 / 2e-19 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.009G056301 [exp] 72 / 4e-14 AT5G13760 145 / 9e-40 Plasma-membrane choline transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039585 [exp] 228 / 2e-68 AT5G13760 719 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10005331 [exp] 226 / 5e-68 AT5G13760 714 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10034295 [exp] 77 / 6e-15 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10041476 [exp] 77 / 7e-15 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [poplar] [flax] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Potri.019G040500.1 pacid=42774071 polypeptide=Potri.019G040500.1.p locus=Potri.019G040500 ID=Potri.019G040500.1.v4.1 annot-version=v4.1 ATGAATGCTGCAGCTACAGGTATTAATGTGCAGAACTTCCACATTCAAGATCAAGAGGGAAAACCTCCATCCATAATCCCCATCAAGGTTCAAGAATCAA GCGTCCAGATTGAAACCGCGACGGTGGCGGGGCTATTAGTCCAGAGGCTCTTTCGAGCCCTCTTCTTTGTTCACATCCTCCTAATCGCGATACTAGTAAT CTGCCTCGCCATCCGTGGCCTCCTCTCCTCCCACAGCCACCATTTTCACCCTAAGAAGTGGTATCCTCCACTCCTTGCTGCAACAGCATGCGCTGGGATT GTGGCTTTCACATGGCAATGGTTCACTTTCCGCAACCCTTCAAGAGCCCTGAGAGCAGCCTTCTGGCTTAGCCCCTTGCTAACCTGTGCAGTAGGCGTGC TGTTTGTATTAATTAGCTCTACTGCAAGTTTAACAATAGGCGTCATTGCTATAGTTCTTGCCCTGATTCTATCCCTTTATGCTTGTTGGGTGAATCCTCG ATTCGATTATGCCACCAAGGTTTTGTCAGTTACTGCTGCTTCCCCTCCTGCCAAGACCACCACATTAATCAACCTCTCAATCATCCTAAGCATTTTGTAT TCCTGTTTCTTGGTATCTGGGATTGGCGGAGCCACTGCTGTTGGAACTGTGATAGACACTTCGTTCATTTTGGTGATCCTTGCGAGCCTGGCATGGAGTA CGCAAGTGATGAAAAACACACTGCAAGTTACAATTGCACGCATCAAGTACCTACACTTTGCATCTGGGGCAGATATGGACTCGAGAATAGCTTTACGGGA CACAATCAAATATTCAATGGGAAGTGTGTGCATCAGCTCAGTCCTTGTGCCGATAATTACCGTAATCCGTGGTTCAGCCCGAGCAATTAGTTTGATTGCA GGGGGCACAGACGAGTTCTTGTTTTCCTGTGCTAATTGTTATTCTGCTGTTGCTGCAACACTAGTTAACTATGGGAATCGGTGGGGTCTTGTGCAAGTAG GGGTTTATAATAAGGGGTTTGTGCAGGCATCCATGGACACATGGGAGATGCTCAGGAGAGTTGGGTTGGAGCCTATAATTGACAGAGATCTGACAGGGTC TTTCTGTTTTCTTTGTGGGATGGCAGGAGGTGCGATATGCACCCTGGTTGGAGGAACATGGACATTTGCCGTTCACAAGAGCTATGCTACAGAAGTGTCA ATCTATGCATTCCTGATTGGCTACTTCATGTGTCGGATAGCAATGGCATGGCAACAATCATGTGTTGCAGCTTACTACATTGCTTACACAGAGAACCCAG AGAACCCACGGCTTGACCCAACTATACTATTTCGCATTCAAGAATTTCAGAGACGTGGAGCTTAA
AA sequence Show only first row Show all	>Potri.019G040500.1 pacid=42774071 polypeptide=Potri.019G040500.1.p locus=Potri.019G040500 ID=Potri.019G040500.1.v4.1 annot-version=v4.1 MNAAATGINVQNFHIQDQEGKPPSIIPIKVQESSVQIETATVAGLLVQRLFRALFFVHILLIAILVICLAIRGLLSSHSHHFHPKKWYPPLLAATACAGI VAFTWQWFTFRNPSRALRAAFWLSPLLTCAVGVLFVLISSTASLTIGVIAIVLALILSLYACWVNPRFDYATKVLSVTAASPPAKTTTLINLSIILSILY SCFLVSGIGGATAVGTVIDTSFILVILASLAWSTQVMKNTLQVTIARIKYLHFASGADMDSRIALRDTIKYSMGSVCISSVLVPIITVIRGSARAISLIA GGTDEFLFSCANCYSAVAATLVNYGNRWGLVQVGVYNKGFVQASMDTWEMLRRVGLEPIIDRDLTGSFCFLCGMAGGAICTLVGGTWTFAVHKSYATEVS IYAFLIGYFMCRIAMAWQQSCVAAYYIAYTENPENPRLDPTILFRIQEFQRRGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04440			Plasma-membrane choline transp...		Potri.019G040500 [exp]	0	1
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	10.00	0.9361
AT1G61590			Protein kinase superfamily pro...		Potri.001G128500 [exp]	12.24	0.9351
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.003G156200 [exp]	16.73	0.9251
AT2G23770			protein kinase family protein ...		Potri.005G128300 [exp]	18.97	0.9257
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Potri.016G049200 [exp]	20.85	0.9242
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.005G074500 [exp]	21.09	0.8860
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.005G188600 [exp]	22.24	0.9192
AT5G67400		RHS19	root hair specific 19 (.1)		Potri.017G064100 [exp]	27.65	0.8480
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.007G072100 [exp]	29.93	0.9225
AT3G05390			unknown protein		Potri.017G135100 [exp]	30.39	0.9224

Compare expression of checked genes

Potri.019G040500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.