Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03660 221 / 1e-71 HD WOX11 WUSCHEL related homeobox 11 (.1.2) AT5G17810 194 / 2e-61 HD WOX12 WUSCHEL related homeobox 12 (.1.2) AT2G33880 96 / 9e-23 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT5G45980 91 / 7e-21 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT2G01500 57 / 2e-09 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT3G18010 57 / 5e-09 HD WOX1 WUSCHEL related homeobox 1 (.1) AT4G35550 56 / 6e-09 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1) AT2G28610 55 / 9e-09 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT1G20700 54 / 2e-08 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT5G59340 54 / 3e-08 HD WOX2 WUSCHEL related homeobox 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066900 [exp] 384 / 5e-136 AT3G03660 233 / 9e-77 WUSCHEL related homeobox 11 (.1.2) Potri.011G061400 [exp] 96 / 1e-22 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.004G051600 [exp] 94 / 6e-22 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.010G111400 [exp] 59 / 6e-10 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.012G047700 [exp] 59 / 9e-10 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.005G252800 [exp] 56 / 4e-09 AT4G35550 196 / 8e-63 WUSCHEL related homeobox 13 (.1) Potri.002G008800 [exp] 56 / 5e-09 AT4G35550 203 / 1e-65 WUSCHEL related homeobox 13 (.1) Potri.015G039100 [exp] 56 / 5e-09 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.005G101800 [exp] 56 / 7e-09 AT4G35550 303 / 2e-104 WUSCHEL related homeobox 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005282 [exp] 103 / 3e-25 AT5G45980 184 / 2e-54 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10013960 [exp] 63 / 3e-11 AT5G45980 179 / 6e-53 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10028271 [exp] 57 / 3e-09 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10041909 [exp] 57 / 4e-09 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10028457 [exp] 57 / 5e-09 AT2G17950 146 / 3e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10023561 [exp] 56 / 6e-09 AT4G35550 201 / 3e-64 WUSCHEL related homeobox 13 (.1) Lus10038480 [exp] 55 / 7e-09 AT2G28610 130 / 1e-37 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10040447 [exp] 56 / 8e-09 AT4G35550 203 / 4e-65 WUSCHEL related homeobox 13 (.1) Lus10018011 [exp] 56 / 1e-08 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10040840 [exp] 55 / 2e-08 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.019G040800.3 pacid=42774627 polypeptide=Potri.019G040800.3.p locus=Potri.019G040800 ID=Potri.019G040800.3.v4.1 annot-version=v4.1 ATGGAAGATAATCAAGGCCAAGACCATAACAGTCAAAGCAACCATGGAACTGAAAGAAGTGAGCCAGTGAGGTCAAGATGGACTCCAAAGCCAGAGCAAA TATTGATACTTGAGTCCATCTTTAACAGTGGAATGGTAAATCCACCAAAAAATGAGACTGTGAGAATAAGGAAGCTTCTTGAAAAATTTGGCTCCGTTGG TGATGCAAATGTTTTCTACTGGTTCCAAAACCGACGATCAAGATCTCGCCGCCGGCAACGCCAGATGCAAGCTAGTCTTCTTGCAGGATATCAAACAAAT AATCAACGGGCATACGATAGCGGTGGTGTAATTCAATACGAAGGTGGTGGCACTTCTAATGGGTTTGCAAATTCTCCATCTTCTTATCTTGTTGGTGCCT CTTCTTCTTGTGGAGTTGTTGGTGAAGATCATGGTGTAGAGAGCTTGTTTTCTTTCTCTAACCAGATGGGTTTTCAAGAATTCGAGCAAACCTCTGGTGT AACTTCAATTGTATGCCCATCAGAGACTTCAAGTTTGCATTACCAAACTGCTGGATTCATCACAATCTTCATCAATGGGGTTCCAACAGAAGTTCCTCGG GTGCCACTTGACGTGAAAGCAATGTTTGGTCAAGATGTAATGTTGGTGCATTCCTCTGGAGTGCCTGTTCCCACTAATGAATTTGGGTTCTTAGTGCAAA TCTTGCATCATGGTGAAAGCTATTTCCTGGTAGGAGAGAATTTTTGGATTTCCATGATAGCTCTGATCTCTCCGCGTCAAACTTCATTTTGTATAAATAA GAAGTACAACGTCCATTAA
AA sequence Show only first row Show all	>Potri.019G040800.3 pacid=42774627 polypeptide=Potri.019G040800.3.p locus=Potri.019G040800 ID=Potri.019G040800.3.v4.1 annot-version=v4.1 MEDNQGQDHNSQSNHGTERSEPVRSRWTPKPEQILILESIFNSGMVNPPKNETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQMQASLLAGYQTN NQRAYDSGGVIQYEGGGTSNGFANSPSSYLVGASSSCGVVGEDHGVESLFSFSNQMGFQEFEQTSGVTSIVCPSETSSLHYQTAGFITIFINGVPTEVPR VPLDVKAMFGQDVMLVHSSGVPVPTNEFGFLVQILHHGESYFLVGENFWISMIALISPRQTSFCINKKYNVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03660	HD	WOX11	WUSCHEL related homeobox 11 (....		Potri.019G040800 [exp]	0	1
AT3G22910			ATPase E1-E2 type family prote...		Potri.008G159100 [exp]	1.73	0.8918	ACA13.1
					Potri.018G074050 [exp]	8.24	0.7649
AT1G55535			unknown protein		Potri.003G223300 [exp]	11.31	0.7058
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441400 [exp]	21.35	0.8257
					Potri.008G017001 [exp]	24.97	0.8192
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183200 [exp]	27.20	0.8275
					Potri.010G135150 [exp]	27.33	0.8086
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.014G071200 [exp]	31.12	0.7902
					Potri.014G022200 [exp]	32.40	0.7701
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094900 [exp]	34.64	0.7789

Compare expression of checked genes

Potri.019G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.