Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02910 220 / 8e-74 AIG2-like (avirulence induced gene) family protein (.1) AT5G46720 139 / 4e-42 AIG2-like (avirulence induced gene) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092600 [exp] 150 / 3e-46 AT5G46720 144 / 8e-44 AIG2-like (avirulence induced gene) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018276 [exp] 207 / 1e-66 AT3G02910 142 / 4e-41 AIG2-like (avirulence induced gene) family protein (.1) Lus10040635 [exp] 186 / 4e-61 AT3G02910 135 / 4e-41 AIG2-like (avirulence induced gene) family protein (.1) Lus10034712 [exp] 159 / 1e-49 AT5G46720 159 / 3e-50 AIG2-like (avirulence induced gene) family protein (.1) Lus10040471 [exp] 0 / 1 ND 52 / 1e-26
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [poplar] [flax] AIG2 PF06094 [poplar] [flax] GGACT Gamma-glutamyl cyclotransferase, AIG2-like
Representative CDS sequence Show only first row Show all	>Potri.019G041100.1 pacid=42774003 polypeptide=Potri.019G041100.1.p locus=Potri.019G041100 ID=Potri.019G041100.1.v4.1 annot-version=v4.1 ATGGGCATCGAAGCAGAAAACAACAGCAATCGTGCATCAACGACAACGCTGGTATTCACGTATGGAACTTTGAAGAGAGGCTTTTCCAACCATGTCTTGA TGCAGGATCTGATCAAAACCGGGGATGCTGTCTTCAATGGAATCTACAGAACCGTTGACAACTACCCGCTTGTCTGTGGGCCATACAGGGTCCCATTCCT TCTCAACCTTCCAGACGCCACCGGGTCTCACCGGGTCACCGGCGAGTTATACGCTGTGTCGAGTCAGGGGCTGTCCAGGCTCGATGAATTGGAGGGAACT GGTAGGGATCACTACGAGAGGCTGCCGATAAGGGTAGAGCCCATTGACGGAGGGGACGCCGTGTTTGGGGTGGAGGCGTATTACGGGCACAGGAGCTATG CGATGGAGATGTGGAAGAGGAGTGGGAAGAGAGGTTATGGAGTGTATGGAGAGAAAGAGGCAAAAGGGTATGTGAAGAGGAAAGACAGGCCACAGAATCT GAGTTTTTTGGAGCAGATTAATGTTTTTGTGTCTTCTTGCAGTGATAATTAA
AA sequence Show only first row Show all	>Potri.019G041100.1 pacid=42774003 polypeptide=Potri.019G041100.1.p locus=Potri.019G041100 ID=Potri.019G041100.1.v4.1 annot-version=v4.1 MGIEAENNSNRASTTTLVFTYGTLKRGFSNHVLMQDLIKTGDAVFNGIYRTVDNYPLVCGPYRVPFLLNLPDATGSHRVTGELYAVSSQGLSRLDELEGT GRDHYERLPIRVEPIDGGDAVFGVEAYYGHRSYAMEMWKRSGKRGYGVYGEKEAKGYVKRKDRPQNLSFLEQINVFVSSCSDN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02910			AIG2-like (avirulence induced ...		Potri.019G041100 [exp]	0	1
AT3G03980			NAD(P)-binding Rossmann-fold s...		Potri.013G059100 [exp]	1.41	0.9202
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.001G132500 [exp]	4.00	0.8883
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.007G110100 [exp]	4.00	0.9124
AT2G38340	AP2_ERF	DREB2E, DREB19	dehydration response element-b...		Potri.016G126100 [exp]	4.24	0.9060	Pt-DREB2.6
AT4G35220			Cyclase family protein (.1)		Potri.001G301501 [exp]	5.19	0.8880
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	5.29	0.9053
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.007G088018 [exp]	8.83	0.8931
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.004G156200 [exp]	11.83	0.8824	Pt-RD2.2
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.008G108000 [exp]	11.83	0.8603
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	12.84	0.8687

Compare expression of checked genes

Potri.019G041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.