Plant FIBer expression Database

Potri.019G041300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62030 622 / 0 diphthamide synthesis DPH2 family protein (.1)
AT3G59630 100 / 1e-22 diphthamide synthesis DPH2 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G123700
[exp]
102 / 3e-23 AT3G59630 578 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039108
[exp]
653 / 0 AT5G62030 636 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Lus10038750
[exp]
592 / 0 AT5G62030 574 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Lus10009552
[exp]
99 / 5e-22 AT3G59630 572 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Lus10020375
[exp]
93 / 8e-20 AT3G59630 560 / 0.0 diphthamide synthesis DPH2 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01866 Diphthamide_syn Putative diphthamide synthesis protein
Representative CDS sequence
>Potri.019G041300.2 pacid=42773190 polypeptide=Potri.019G041300.2.p locus=Potri.019G041300 ID=Potri.019G041300.2.v4.1 annot-version=v4.1
ATGCAAGCAATCCAACTCAATCAAAAATCAAAACCAACACCAAAACGTTTCATAAAATCCCAAATCCCAGACTCAATCCTGAACGACCCATCCCTTAACG
CCTCCATCTCTCTCTTGCCTTCCAACTACAACTTCGAAATCCACAAATGTATCTGGCGCGTGCGTTCCACCAACGCTAAACGCATAGCCCTCCAGCTCCC
TGAAGGCCTCCTCATGTATTCTCTAATCCTCTCTGACATCTTCACTGCCTTCGCTGACGTCACCCACTGCTTCGTCCTCGGCGACGTCACCTACGGCGCC
TGCTGTGTAGACGATTTGTCGGCTTTGGCTCTCGATGCCGATTTATTGATCCACTACGGTCATAGCTGTTTGATACCTATTGATGCCACCAAAATCCCAT
GTCTCTATGTCTTTGTAGAAATCAAAATCGATGTCAGCCGTCTGATCAACACGATCAGCCTCAATTTTGGGACCCACAAGAGAAATATTGTGCTCGCGGG
CACGATTCAGTTTGCTTCGGCGATCAGGGAAGCGAAACCTGAATTGGAAAATAATGGGTTTGTTGTTTTGATCCCGCAATCGAAACCCTTATCGGCTGGA
GAGGTTTTGGGTTGTACCGCACCCAAAATGTCAAAAAATGTTGTTGGGAATTTGGGCTTTAGTGAGGAGGAGATGGTTTTGGTGTTTGTAGCAGATGGAA
GGTTTCATTTAGAGGCATTTATGATTGCGAATCCGGGGATTAAGGCATTTAGGTATGACCCTTATTTAGGGAAGTTGTTTTTGGAGGAGTATGATCATAA
GGGAATGAAGGAGGTAAGGAAAAAGGCGATAGAGAGGGCAAAGGGAGCGAGGAGTTGGGGGGTTGTTTTGGGAACTTTGGGAAGGCAAGGGAACCCGAGG
ATACTGGAAAGGTTGGAAAAGAAGATGGGGGAGAAAGGGTTTGATTATATGGTTGTTTTGATGTCAGAAATTAGTCCGGGTAGGATTGCATTGTTTGAGG
ATTCGGTTGATGCCTGGATTCAAATCGCTTGTCCTAGGCTTTCTATTGATTGGGGGGATGCTTTTAAGAAGCCATTGTTGACGCCTTTCGAGGCAGAGAT
TGCGCTTGGGGATTTGGCTGGTTGGTGGGAGAAGAGTTTGGTGGTGAATTCAGGGTGCGGTGGTGGTGGGAGTGGTTTGGGATGTGGTCAGAAGAGTGAT
GGATCATGCTGTGAATGTAGCAATGGGGATGCAAAGGGTGTGGAGAAAGATTTTGGGGGGGAGTATCCCATGGATTACTATGCTCAGGATGGGGGGGAAT
GGAATTCTTCTTATGTGAAGAAACCAACTCGCCCAGTGCGGAGAAATGTTGTCTCTTCTATCAGAAATGATCCTGCTTCTTAA
AA sequence
>Potri.019G041300.2 pacid=42773190 polypeptide=Potri.019G041300.2.p locus=Potri.019G041300 ID=Potri.019G041300.2.v4.1 annot-version=v4.1
MQAIQLNQKSKPTPKRFIKSQIPDSILNDPSLNASISLLPSNYNFEIHKCIWRVRSTNAKRIALQLPEGLLMYSLILSDIFTAFADVTHCFVLGDVTYGA
CCVDDLSALALDADLLIHYGHSCLIPIDATKIPCLYVFVEIKIDVSRLINTISLNFGTHKRNIVLAGTIQFASAIREAKPELENNGFVVLIPQSKPLSAG
EVLGCTAPKMSKNVVGNLGFSEEEMVLVFVADGRFHLEAFMIANPGIKAFRYDPYLGKLFLEEYDHKGMKEVRKKAIERAKGARSWGVVLGTLGRQGNPR
ILERLEKKMGEKGFDYMVVLMSEISPGRIALFEDSVDAWIQIACPRLSIDWGDAFKKPLLTPFEAEIALGDLAGWWEKSLVVNSGCGGGGSGLGCGQKSD
GSCCECSNGDAKGVEKDFGGEYPMDYYAQDGGEWNSSYVKKPTRPVRRNVVSSIRNDPAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62030 diphthamide synthesis DPH2 fam... Potri.019G041300
[exp]
0 1
AT1G51450 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRA... Potri.009G051400
[exp]
2.00 0.8999
AT3G19895 RING/U-box superfamily protein... Potri.010G171100
[exp]
2.44 0.8963
AT5G41770 crooked neck protein, putative... Potri.003G137200
[exp]
2.82 0.8761
AT1G77180 SKIP chromatin protein family (.1.2... Potri.018G086100
[exp]
6.00 0.8773
AT1G28060 Pre-mRNA-splicing factor 3 (.1... Potri.010G213300
[exp]
6.16 0.8525
AT3G60850 unknown protein Potri.014G070200
[exp]
6.63 0.8714
AT5G58020 unknown protein Potri.006G186900
[exp]
6.92 0.8463
AT1G30460 C3HZnF CPSF30, ATCPSF3... ARABIDOPSIS THALIANA CLEAVAGE ... Potri.001G357800
[exp]
9.00 0.8750
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Potri.001G171100
[exp]
9.89 0.8639
AT4G25210 GeBP DNA-binding storekeeper protei... Potri.009G088400
[exp]
10.48 0.8500

Potri.019G041300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.