Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16650 193 / 6e-65 Chaperone DnaJ-domain superfamily protein (.1) AT2G33735 102 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) AT4G28480 73 / 3e-16 DNAJ heat shock family protein (.1.2) AT3G08910 73 / 3e-16 DNAJ heat shock family protein (.1) AT5G01390 72 / 3e-16 DNAJ heat shock family protein (.1.2.3.4) AT3G62600 72 / 6e-16 ATERDJ3B DNAJ heat shock family protein (.1) AT1G56300 69 / 1e-15 Chaperone DnaJ-domain superfamily protein (.1) AT2G20560 70 / 5e-15 DNAJ heat shock family protein (.1) AT1G59725 70 / 5e-15 DNAJ heat shock family protein (.1) AT1G24120 69 / 2e-14 ARL1 ARG1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G078200 [exp] 221 / 3e-76 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G103900 [exp] 136 / 3e-42 AT2G33735 147 / 2e-46 Chaperone DnaJ-domain superfamily protein (.1) Potri.018G034600 [exp] 74 / 2e-16 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.008G123200 [exp] 74 / 2e-16 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.014G122600 [exp] 73 / 4e-16 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 73 / 4e-16 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.008G193500 [exp] 72 / 8e-16 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.017G016100 [exp] 72 / 8e-16 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 72 / 8e-16 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014901 [exp] 81 / 8e-21 AT2G33735 85 / 2e-22 Chaperone DnaJ-domain superfamily protein (.1) Lus10040535 [exp] 81 / 2e-20 AT2G33735 84 / 1e-21 Chaperone DnaJ-domain superfamily protein (.1) Lus10027803 [exp] 75 / 7e-17 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 75 / 7e-17 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10029862 [exp] 72 / 7e-17 AT1G56300 201 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Lus10020685 [exp] 72 / 8e-17 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10013981 [exp] 73 / 3e-16 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10005113 [exp] 72 / 7e-16 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10017687 [exp] 71 / 3e-15 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10008109 [exp] 70 / 6e-15 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.019G041400.2 pacid=42773138 polypeptide=Potri.019G041400.2.p locus=Potri.019G041400 ID=Potri.019G041400.2.v4.1 annot-version=v4.1 ATGGAAGGCAATGAAAACACCACTCAAAAGGATTACTACAAAATTTTGGAGGTTGATTATGATGCAACAGATGAGAAGATAAGACTAAATTACCGAAGGC TTGCATTGAAGTGGCATCCTGATAAGCACAAGGGGGATAATGCAGTTACTACCAAATTTCAAGAGATTAACGAAGCTTACAATGTATTGAGGGATCCAGA TAAACGCTTCGATTATGACTTAACTGGAATATATGAGATTGATAAGTATACTTTGCGGGAATATCTGACCAGATTTAAAGGAATGATACTTACGTGCAAT GGTCTTGGTATTGGTAATACATCAATATGGACCCAGCAACTGACTGAAATCAAAGAGTTTGCAGAGAAATAA
AA sequence Show only first row Show all	>Potri.019G041400.2 pacid=42773138 polypeptide=Potri.019G041400.2.p locus=Potri.019G041400 ID=Potri.019G041400.2.v4.1 annot-version=v4.1 MEGNENTTQKDYYKILEVDYDATDEKIRLNYRRLALKWHPDKHKGDNAVTTKFQEINEAYNVLRDPDKRFDYDLTGIYEIDKYTLREYLTRFKGMILTCN GLGIGNTSIWTQQLTEIKEFAEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16650			Chaperone DnaJ-domain superfam...		Potri.019G041400 [exp]	0	1
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.010G065600 [exp]	6.70	0.9543	RNP1.1
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Potri.003G096600 [exp]	8.36	0.9438
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Potri.010G116500 [exp]	10.09	0.9474
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Potri.006G049100 [exp]	11.13	0.9463
AT5G27290			unknown protein		Potri.013G029000 [exp]	18.46	0.9361
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	21.07	0.9468	Pt-FFC.2
AT2G28605			Photosystem II reaction center...		Potri.007G100800 [exp]	22.97	0.9142
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G147100 [exp]	33.22	0.9438	Pt-HCF106.1
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Potri.006G197600 [exp]	36.00	0.9326
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	40.60	0.9349

Compare expression of checked genes

Potri.019G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.