Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16660 135 / 7e-41 unknown protein AT3G02900 131 / 2e-39 unknown protein AT1G42960 60 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G078100 [exp] 244 / 6e-84 AT5G16660 134 / 1e-40 unknown protein Potri.005G254200 [exp] 59 / 4e-11 AT1G42960 141 / 5e-43 unknown protein Potri.007G064100 [exp] 58 / 4e-11 AT1G42960 147 / 1e-45 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026866 [exp] 121 / 7e-36 AT5G16660 119 / 7e-35 unknown protein Lus10009524 [exp] 117 / 2e-33 AT3G02900 138 / 1e-41 unknown protein Lus10012242 [exp] 57 / 2e-10 AT1G42960 163 / 8e-52 unknown protein Lus10016034 [exp] 56 / 4e-10 AT1G42960 160 / 2e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G041700.2 pacid=42774042 polypeptide=Potri.019G041700.2.p locus=Potri.019G041700 ID=Potri.019G041700.2.v4.1 annot-version=v4.1 ATGGCTACTTCTCTTGCTCCTGTTTCAATCTCATCAGGTGGATCTCAACTTAAGGCACGTCCCCTTTGGTCGACAAAATCCATTTCACTTGCCAAATCTC CAGGACTGGCAGTTGGAAGGAAATCAAACCCAGTGGGAACCAGCCCCAAGTTGGCAGTTCGTGCCCAATACAATGATGGTAGCAGCGGTGGCGGCGGTGA TTTTGTTGCTGGTTTTCTTTTAGGAGGTGCTGTATTTGGAACTGTAGCATATATTTTTGCTCCTCAGATAAGAAGATCCCTGCTAAATGAAGATGAATAT GGATTTCGGAAGGCCAAGCGGCCAATATACTATGATGAAGGTTTAGAGAAGACCAGGAAGACCTTGAATGCAAAAATCAGCCAACTGAATTCTGCTATTG ACAAAGTATCTTCTCGTCTGAGAGGTGGCAATAATTCTCCTCCTGTGCCTCTTGAAGCTGATCCTGAGATGGAAGCTACAATGTGA
AA sequence Show only first row Show all	>Potri.019G041700.2 pacid=42774042 polypeptide=Potri.019G041700.2.p locus=Potri.019G041700 ID=Potri.019G041700.2.v4.1 annot-version=v4.1 MATSLAPVSISSGGSQLKARPLWSTKSISLAKSPGLAVGRKSNPVGTSPKLAVRAQYNDGSSGGGGDFVAGFLLGGAVFGTVAYIFAPQIRRSLLNEDEY GFRKAKRPIYYDEGLEKTRKTLNAKISQLNSAIDKVSSRLRGGNNSPPVPLEADPEMEATM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16660			unknown protein		Potri.019G041700 [exp]	0	1
AT5G40810			Cytochrome C1 family (.1.2)		Potri.009G165000 [exp]	1.00	0.8818
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004500 [exp]	3.16	0.8556
AT3G56130			biotin/lipoyl attachment domai...		Potri.008G074100 [exp]	4.47	0.8397
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.015G098600 [exp]	4.89	0.8539
AT5G09570			Cox19-like CHCH family protein...		Potri.001G282900 [exp]	6.32	0.8291
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.008G056300 [exp]	7.14	0.8103	CTIMC.1
AT5G40810			Cytochrome C1 family (.1.2)		Potri.004G203800 [exp]	7.74	0.8043
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.011G096300 [exp]	8.94	0.8423
AT4G29830		VIP3	vernalization independence 3, ...		Potri.006G145800 [exp]	10.81	0.8174
AT3G03100			NADH:ubiquinone oxidoreductase...		Potri.019G051400 [exp]	16.15	0.8330

Compare expression of checked genes

Potri.019G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.