Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16680 288 / 5e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G02890 230 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G43770 99 / 3e-21 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G17850 59 / 2e-09 unknown protein AT5G61100 45 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077900 [exp] 1313 / 0 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G091000 [exp] 177 / 2e-44 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G110400 [exp] 102 / 1e-22 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G173200 [exp] 101 / 6e-22 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G189400 [exp] 83 / 4e-16 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G040100 [exp] 72 / 2e-12 AT5G61120 127 / 1e-31 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020350 [exp] 498 / 1e-149 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10009530 [exp] 323 / 2e-89 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028603 [exp] 84 / 4e-16 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035396 [exp] 54 / 7e-07 AT5G61120 76 / 4e-15 unknown protein Lus10030998 [exp] 52 / 2e-06 AT5G61120 71 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G041900.3 pacid=42773502 polypeptide=Potri.019G041900.3.p locus=Potri.019G041900 ID=Potri.019G041900.3.v4.1 annot-version=v4.1 ATGCAACGTTCAGGAGCTATAAAATGCGACGGACATAATTGGGGAACCAAAGGCATGCAAGGGCCATTAGACGAAACTCAGAAGAAGTGCATGGTTGAAA AAGGATTAGGCAAACCTTCCATGAGACGGAAAGTTCGTACCAGCACTGAGTCTGGGACCTGTAATGTGTGCTCTGCTCCCTGTTCATCTTGTATGCATCT TAAGCTAGCCTGTATGGGATCAAAGGGTGATGAGTTTTCTGATGAAACCTGTCGTGTAACTGCATCAAGTCAGTATTCTAATAATGATGGTGATGGTTTA GTCTCGTTTAAAAGTAGAGCACGTGACAGCTTACAGCATACCACCAGTGAAGCAAGCAACCTGCTCAGTGTCAGTTCAAGTCATGATTCTCTGTCTGAAA ATGCAGAAAGTAAAGTAAACAGAAAGTCATCTGATGCTGATGCGTCAGCTGAGTCTCAGATGCGTCCGAAGATGTCCTCTGGTAGAGCTGTTGCAGAGGA TCAGTTTTCTCCAAAAGCAGAGAGTTTTCCAGATCAGAAAACTTTCTCAAAGAACAATGTGGATTCTAAATCTGAAGAGGGCCATGATGATAACATGTCA TGTGTTAGTAGAGCTAATGATGCAAGCAAAGTGGTTAGTTATTATAACAAGAATTTAGACATGAAAAATTGTTTGCCCAGTTCAGCTTTAGAAGTGGAAG GATCTGGAAAGGCACCATTTTCTCATAAATCAGGTTCATTTGAGACTCCTTCAAATGATGTTGATGCTTGCAGTAGCTCACCAAAGGTACAGACTAAGTG CCTTTCCTCTAATTCAAATGGTAAACATTTAGATGAAGATCCAGCTTTACATGACCATGGAAAACGGTTTGAATGTCCAACAGAACAAGTCAATCTGTCA TTGTCAAAAGAAGCATCAGCTAATATTGATTGTGTTGGCAACTTGGCTGCACACAACATTGCTGATAACAATGCAAATGGTAAAAGTACCCTCAATGCAG ATAGTTCCAAGGTTTCATGTAAAATCAATTCAAAATTAGAATTAGAGGCAGACGAAGATAGTGGGGACCAAGCAGATGAGGGTTTTAAATGTTCTGACCA AGTTGAACGAAAAGAGAAGTTGAATGAGTCAGATGAGTTAGCAGATATGCAGGAGCCTATGTTGCAATCTGCATCTGGGGATGAGAGTGACGAGTCTGAA ATTCTGGAACATGATGTAAAAGTGTGTGATATTTGCGGGGATGCAGGTCGGGAGGATTTTCTTGCCATATGTAGTAGGTGCGCAGATGGTGCAGAACACA TCTATTGTATGCGAGAGATGCTTCAGAAACTTCCTGAAGGTGACTGGTTGTGTGAAGAATGCAAGTTGGCTGAGGAAGCTGAAAATCAAAAGCAAGATGC TGAGGAAAAAAGGATGAACGTAGCAAGTACTCAGAGCTCTGGCAAGAGACATGCAGAACATATGGAGCTGGCTTCAGCACCCAAAAGGCAGGCAACTGAA TCAAGTTTGGCATCACCCAAGTCATGCAGTCCTAGCAGAATAGCTGCAGTGTCTCGGGATACTTCATTCAAGAGCTTAGATAAGGGAAAAGTAAAGATAG CTCATCAAACATCTTTTGGCAATCGCTCCAATATTGATATTCCGGAAATTGCGCGCCCTTCTGTGAATGGTCCACATGTTCAAACTCCCAAGGGGGCCTT ATTGAAGTCCAAGTCGTTCAACACCTTAAATTCCAAAATGAAAGTGAAACTTGTCGATGAAGTTCCTCAAAAGCATAAGGGCGCGAGAGAGAGTTCTCTT GATATGAAGGAGGGGGCTGCTAGAATGATGAGGAAAAGTATGTCATTTAAATCTGCGAGCTCAGGCCGATCCAGCACTAATGAGTTGAAAGTTAAAATGC TTTCATCCAAATTCTCTCACATTCAAGATTCAAGAGGATTGAAACAAGTGAAAGACTGGGATGCTGTTGATAGAAAAAAAATGTTGAGATTGGGTCGCCC TCCAGGTAGTTCAATGACAAGTAGTGCTGTTGTTTCAACACCTAAGGTCGATCAAGGGTTCACTCCTCGTGGTGAAAGTGTCATAGCATCATCCACAGGC AACAACAGAGAGTTGAAGTCCGCACAATCTAATGGAAAATTGGGTACCCTATCAAGATCAACTAGCAATGTAGGTTGTAAAGGTGCAGATACTTCAGTTA CTTCAGTTCAAGCCTCGTCTAAAAATGGAATAAGCAGTAATTCTGCGGAACAAAAATTGAACCAAATTAGCCCCAAGGATGAACCCTCATCCAGTTCTTG GAATGCTGCCAGTAATGCTACTGAAAATTTGCAAGATGGCCTACCTCGATCACGGGAATCATCAAATCAAGGTGAAAAGGCTAGGGAAAATTCTCTCAGT CGCTTGAGACCTACTGGTATCACTGGGTTGAAAAATGTCCCTTGTCAAAAGTGCAAGGAAATTTGTCATGCTACAGAAAATTGCACTGTTGTTAGTCCTT TGGCTTCTGGTACTGATGTATCTGCTTCTAGAATTCCTAGAGAGGAGATGAGCAAAGGTAGAAAATTGAAAGCTGCAATTGAGGCTGCTGCTATGCTTAA GAAGCCTGGAATATACAGAAAGAAGAAAGAAATTGATCAATCTGATGGGTTGTCCTCATCAAATGTGGATGAAAGTGGCGAGATGGCTTCTCAAGATCAG CTCTCAGTTTTAAATAAGTTGAGTGAAGGAACAGATGAAGGGCAAGCAAATATCGGTGCTTCTTCCTCTGAGTTTTGCAAATCGACAATTATTAATAATG TGAAGCAGCTTAATGAGCACTCCAATGATGCTGTATGTCCTTTCAAGGTGGGGTCAGATTCTATTGCCCCTTATTTGGGAAAGCCTGTTCATGATTCAGC AGAAAAGTCTGTCCTTACAAAGATGGGGTCAGACTCCACTTCCCCTTACTTGGGAAAGCCTGTTCATGCTTCTTCCTCTGAGTTCTGCAAATCAACAAAT ATTACTAATGTGAAGCAGCTGAATGAGCACTCCAATGATGCTGTTTGTCCTTTCAAGGTGGGGTCAGATTCTATCACCCCTTATTTGGGAAAGCCTGTTC ATGCTTCAGCAGAAAAGTCTGTCCTTACAAAGATGGAGTCAGATTCTACTGCCCCTTACTTGGGAAAGCTTGTTCATGCTTCTTCCTCTGAGTTCTGCAA ATCAAAAAATATTTATAATGTGAAGCAGCTTAATGAGCACTCCAATGAAGCTGTTTGTCCTTTCAAGGTGGGGTCAGATTCCATTGCCCCTTATTTGGGA AAGTCTGTTCATGCTTCAGCAGAGAAGTCTGTCCTTACAAAGATGTCAGCTATCCCAGAGCATGAATATATCTGGCAGGGGGTGTTTGAAGTGCATAGAG CTGAAAAGGTTGTTGACTTATATGATGGAATTCAAGCACATCTATCTACTTGTGCATCTCCTAAAGTCCTTGATGTGGTTAGCAAATTCCCCCAGAAAAT TAAGTTGGATGAAGTACCTCGCATTAGCACATGGCCGAGACAATTCCTTGTCACTGGTGCCAAAGAGGAAAATATTGCTCTTTACTTCTTTGCAAAGAAT TTTGAAAGTTATGAGAACTACAAGAGATTGTTAGACAACATGATTAAAAAGGATTTGGCCCTCAAAGGATCATTTGAAGGTGTTGAATTCTTCATATTCC CATCCACACAGCTTCCAGAGAACTCACAGCGCTGGAACATGTTATATTTCTTGTGGGGAGTGTTCAGGGGAAGGAGATCTGATTGTTCAGATTCATTCAA GAAGTTAGTTATGCCCAGTTTGAATGGGGTGCCCAGGGACAAAGACATTCCCGCTGCAGTCATGACTTCATCTGAGAATCTCTGTGTGCCTGAATGTATA GTTAAAAATACATCTGCATGTGACAGTCCATGTTCTTCTGATGTGCATCTTGCAGCAAATGCTCCTGAGAAACCAAGTGTTTCCTTAAATGGGAACTCTG ATGACAAAGTATTTAATTCACAAACCAACCTAGAGAAGCAAGATGGTAAAGTTGACTCCAGATCGTTGACAAAGATTCGAGGAAGCAGTACCCCATGGTG CCCAGAAGCTAGATGCAGCAGTCCTTCCCTGGAAGAAGTTGGTCCTCCTAGGTGCAGTCTGGATGTGGACCCGAAACCCTGTACTGAGGTAACTCGGACT AATTCTGTCTCTGATGTGAAGGAGATACAAATTCATGAAGGTGCTTCATGTCTTGGAGAAGATATGCCCTTCAAGATTTTTGGTGTTGGTAGTCAAAATT CAGGCTGCAGGAGGATTTTTGGTGAGGATAAAATAGTTGATAGAACATTCAGTGACAAAGATAATATTATAGTTGAAAGGGACTTGAATGAAGATAACGT GAATATAGATGTGGAGACTTTCTCAGGGAAAGGTCCAAGGAAACGACCATTTTTGTATTTGTCAGATACTGCACCTCTGATTTCGAGTAGCATGACTCAA AAGGCTCCGTGGAACAAGGCAGATAATAATAATACGTTGGTGGATGGAGAGAGCATCAGTAAGAAGCTGAAGACGGGTTTTAGTGGGCTATATGGGGGTA GTGGTTCAAGAGAGGAAAATTCTTTGAGCGGTAGTTTTACTTCACAGACATGTGATTTGGGTTCCAGCTCCTCCGTGGAGGAGAGGAGCTATGACAAAGC ATCTGCTGAAAAGGTAATCTTGGAGGGCCTGGGAACTAGTGAAAGGTACTTCTTTCCCGTGGATTCACATCATGTCAAGGATAGTCGGTTGCCTGCTATC TTCATGCCCTGGAACTCATCAAATGATGAGGATCGAGTTCGTGATGGGATTCCAAATCTTGAGCTTGCCTTAGGAGCTGAGACGAAATCCCCAAACAAGC GAATCCTGCCTTTCTTTGGAATGGCTGAAAAAAATCATATCCAGAACAAGCCTCCAGACAAGGTAATGAACAAGGAAGAAGAAGATGGTGTCTCTGCTTC CCTTTCCCTCTCCCTCTCATTCCCATTCCCAGACTAG
AA sequence Show only first row Show all	>Potri.019G041900.3 pacid=42773502 polypeptide=Potri.019G041900.3.p locus=Potri.019G041900 ID=Potri.019G041900.3.v4.1 annot-version=v4.1 MQRSGAIKCDGHNWGTKGMQGPLDETQKKCMVEKGLGKPSMRRKVRTSTESGTCNVCSAPCSSCMHLKLACMGSKGDEFSDETCRVTASSQYSNNDGDGL VSFKSRARDSLQHTTSEASNLLSVSSSHDSLSENAESKVNRKSSDADASAESQMRPKMSSGRAVAEDQFSPKAESFPDQKTFSKNNVDSKSEEGHDDNMS CVSRANDASKVVSYYNKNLDMKNCLPSSALEVEGSGKAPFSHKSGSFETPSNDVDACSSSPKVQTKCLSSNSNGKHLDEDPALHDHGKRFECPTEQVNLS LSKEASANIDCVGNLAAHNIADNNANGKSTLNADSSKVSCKINSKLELEADEDSGDQADEGFKCSDQVERKEKLNESDELADMQEPMLQSASGDESDESE ILEHDVKVCDICGDAGREDFLAICSRCADGAEHIYCMREMLQKLPEGDWLCEECKLAEEAENQKQDAEEKRMNVASTQSSGKRHAEHMELASAPKRQATE SSLASPKSCSPSRIAAVSRDTSFKSLDKGKVKIAHQTSFGNRSNIDIPEIARPSVNGPHVQTPKGALLKSKSFNTLNSKMKVKLVDEVPQKHKGARESSL DMKEGAARMMRKSMSFKSASSGRSSTNELKVKMLSSKFSHIQDSRGLKQVKDWDAVDRKKMLRLGRPPGSSMTSSAVVSTPKVDQGFTPRGESVIASSTG NNRELKSAQSNGKLGTLSRSTSNVGCKGADTSVTSVQASSKNGISSNSAEQKLNQISPKDEPSSSSWNAASNATENLQDGLPRSRESSNQGEKARENSLS RLRPTGITGLKNVPCQKCKEICHATENCTVVSPLASGTDVSASRIPREEMSKGRKLKAAIEAAAMLKKPGIYRKKKEIDQSDGLSSSNVDESGEMASQDQ LSVLNKLSEGTDEGQANIGASSSEFCKSTIINNVKQLNEHSNDAVCPFKVGSDSIAPYLGKPVHDSAEKSVLTKMGSDSTSPYLGKPVHASSSEFCKSTN ITNVKQLNEHSNDAVCPFKVGSDSITPYLGKPVHASAEKSVLTKMESDSTAPYLGKLVHASSSEFCKSKNIYNVKQLNEHSNEAVCPFKVGSDSIAPYLG KSVHASAEKSVLTKMSAIPEHEYIWQGVFEVHRAEKVVDLYDGIQAHLSTCASPKVLDVVSKFPQKIKLDEVPRISTWPRQFLVTGAKEENIALYFFAKN FESYENYKRLLDNMIKKDLALKGSFEGVEFFIFPSTQLPENSQRWNMLYFLWGVFRGRRSDCSDSFKKLVMPSLNGVPRDKDIPAAVMTSSENLCVPECI VKNTSACDSPCSSDVHLAANAPEKPSVSLNGNSDDKVFNSQTNLEKQDGKVDSRSLTKIRGSSTPWCPEARCSSPSLEEVGPPRCSLDVDPKPCTEVTRT NSVSDVKEIQIHEGASCLGEDMPFKIFGVGSQNSGCRRIFGEDKIVDRTFSDKDNIIVERDLNEDNVNIDVETFSGKGPRKRPFLYLSDTAPLISSSMTQ KAPWNKADNNNTLVDGESISKKLKTGFSGLYGGSGSREENSLSGSFTSQTCDLGSSSSVEERSYDKASAEKVILEGLGTSERYFFPVDSHHVKDSRLPAI FMPWNSSNDEDRVRDGIPNLELALGAETKSPNKRILPFFGMAEKNHIQNKPPDKVMNKEEEDGVSASLSLSLSFPFPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	0	1
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.003G171200 [exp]	1.00	0.9243
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	1.41	0.9089
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	4.24	0.9029
AT4G15840			BTB/POZ domain-containing prot...		Potri.010G014000 [exp]	6.85	0.8237
AT5G20610			unknown protein		Potri.006G145500 [exp]	7.48	0.8727
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	7.48	0.8922
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.006G250900 [exp]	11.22	0.8773
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Potri.008G101200 [exp]	13.49	0.7993
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	13.63	0.8835
AT5G25070			unknown protein		Potri.002G000800 [exp]	14.86	0.8522

Compare expression of checked genes

Potri.019G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.