Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17170 300 / 8e-103 ENH1 enhancer of sos3-1, rubredoxin family protein (.1.2) AT5G51010 56 / 2e-09 Rubredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108100 [exp] 59 / 2e-10 AT5G51010 160 / 5e-51 Rubredoxin-like superfamily protein (.1) Potri.012G109700 [exp] 0 / 1 AT5G51010 0 / 1 Rubredoxin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003157 [exp] 290 / 6e-99 AT5G17170 377 / 3e-133 enhancer of sos3-1, rubredoxin family protein (.1.2) Lus10002349 [exp] 276 / 4e-93 AT5G17170 360 / 5e-126 enhancer of sos3-1, rubredoxin family protein (.1.2) Lus10016735 [exp] 52 / 5e-08 AT5G51010 189 / 3e-62 Rubredoxin-like superfamily protein (.1) Lus10022430 [exp] 48 / 1e-06 AT5G51010 190 / 8e-63 Rubredoxin-like superfamily protein (.1) Lus10010322 [exp] 44 / 5e-05 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10013403 [exp] 42 / 0.0002 AT1G55480 395 / 3e-138 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G042600.1 pacid=42774316 polypeptide=Potri.019G042600.1.p locus=Potri.019G042600 ID=Potri.019G042600.1.v4.1 annot-version=v4.1 ATGTCATCAGCTGTAGTTGCAGGAACCACCTCCACTTCTTGCTTTGCCACCTTCAGCAAGAATCACTCCCTTAAAACTACCACACCTACATCTACGAAAT CATTCATTTCCTCTCATTACCAGAAAAGCAACTTTCAAGGCCTATCACTTCAAGATGGCAAAAGGGGTTGCTCGGATATCTTCATGCCTAACAGCAGCTG CAGTACTTTGATCAATGTGAGAACAGGGCTTCAGGTCACTGCCAGAACAGCTGGGGCTGCAAAGACAATTGAGGTTGAGGTTGACAAGCCACTGGGTCTC ACTTTGGGTCAAAAGTCTGGCGGTGGTGTAGTCATAACTGGCGTAGAGGGGGGTGGGAATGCAGCCAAAGCAGGGCTAAAATCAGGGGACCAGGTGCTCT ACACTAGTAGCTTCTTCGGGGATGAACTTTGGCCTGCTGATAAGCTGGGGTTTACTAAAACTGCCATCCAAGCAAAGCCAGATTCTATTTATTTTGTTGT TAGCAGAGGCGCAGAAGTAGATGTCAAACGACTGCCTAAGCGTCCTGCTCCTCCCCGCTTTGGAAGGAAGTTGACTGAGGCTCAGAAGGCTAGAGCAACT CACATATGCATTGATTGTGGATTCATATACACCTTGCAGAAATCCTTTGATGAGCAGCCGGAAGCATACGTATGCCCACAATGTAGAGCGCCAAAGAAGA GATTTGCACGATATGATGTGAATACTGGAAGAGCAGTTGGTGGCGGATTGCCTCCTATCGGAGTCATCATTGGGCTAGTGGCTGGCATTGGTGCAGTTGG TGCCCTGCTTGTTTATGGCCTTCAATGA
AA sequence Show only first row Show all	>Potri.019G042600.1 pacid=42774316 polypeptide=Potri.019G042600.1.p locus=Potri.019G042600 ID=Potri.019G042600.1.v4.1 annot-version=v4.1 MSSAVVAGTTSTSCFATFSKNHSLKTTTPTSTKSFISSHYQKSNFQGLSLQDGKRGCSDIFMPNSSCSTLINVRTGLQVTARTAGAAKTIEVEVDKPLGL TLGQKSGGGVVITGVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSIYFVVSRGAEVDVKRLPKRPAPPRFGRKLTEAQKARAT HICIDCGFIYTLQKSFDEQPEAYVCPQCRAPKKRFARYDVNTGRAVGGGLPPIGVIIGLVAGIGAVGALLVYGLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Potri.019G042600 [exp]	0	1
AT4G10300			RmlC-like cupins superfamily p...		Potri.013G089600 [exp]	1.41	0.9899
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.001G438700 [exp]	2.64	0.9814
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Potri.008G169100 [exp]	2.82	0.9850
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Potri.002G062100 [exp]	3.46	0.9847
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Potri.009G124100 [exp]	3.46	0.9815
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.002G196100 [exp]	4.47	0.9817
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.005G097000 [exp]	4.47	0.9804
AT5G55570			unknown protein		Potri.011G085700 [exp]	6.00	0.9839
AT3G50685			unknown protein		Potri.007G027400 [exp]	6.00	0.9804
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.005G209500 [exp]	8.00	0.9810

Compare expression of checked genes

Potri.019G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.