Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17510 309 / 2e-102 unknown protein AT3G03460 231 / 2e-72 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G076800 [exp] 384 / 6e-132 AT5G17510 310 / 3e-104 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024530 [exp] 357 / 6e-123 AT5G17510 356 / 5e-124 unknown protein Lus10024979 [exp] 352 / 6e-121 AT5G17510 355 / 3e-123 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15249 [poplar] [flax] GLTSCR1 Conserved region of unknown function on GLTSCR protein
Representative CDS sequence Show only first row Show all	>Potri.019G042800.1 pacid=42773550 polypeptide=Potri.019G042800.1.p locus=Potri.019G042800 ID=Potri.019G042800.1.v4.1 annot-version=v4.1 ATGGATCATCATCATCATCAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAACAACAATTGCTTTTACAACAACAACAACAACAGGTGCATCATCAGC AGCAGCAGCAGCAGCAGCAGCAACATCAACAACAACAACAATTCCTCCTGTTACAGCAATTAACAAAACAAGCCCAACAACAACAACAAGCTGCTGCTAT TTCTCGATTCCCATCGAATATTGATGCCCACTTGCGTCCACCATCTATTCATCGCCCACTCACTCTTCAACAACAAAACCCTAACCCTAACCCTAACTCT AACCCCAACCCCAACCCCAACCCTAATTTGCAGCAGCATCAGCAGCAAGGTTCCAATTTGGGGCAAAATGCGCAGCATTCACAAAAGCCGCAACAGCAGC AGCAGCCACAGCCGCAGCAGCAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCA ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAAGGGGATTCGGCCTCAGGTGAACCAGGTGGAGATCCAAATGGCTTACCAGGATGCTTGGCGTGTTTGT CATCCAGATTTCAAGAGGCCATTCGGTTCTCTTGAAGATGCCTGCGAGAGATTACTGCCTTACCATGTAGTAGCAGACTATGAGGCAGAGGAGGATGATA GAATCCTTGATTTAGACACAACAGGTCAGATGCCATCTCGTTCGCAGCAGTGGGATCATAACATTGCTGCTAAAGTTGCTGAGTTCACAGGCACATTTGA GAAACAGGCCTTAGCCTTCAACATAATAACCCGCAAGCGTTCCTTGGGGGAATTCCGATCTGAAGAGAGATTGATGATTGAACAGGCTCTTCTCCAAGAG GAGAAGCGACTTTTGCTCAATTTGAAAGCTGAAATGGATGCCAGGGAGAAGGCCAGTCGGGAGGCTCAGTTAAGAATGGCGGCTATGTTTCAGGCCGAGC AAGCTCAGGCAGAATCACATGCTCATGCTGAAATGATGTCTCGGGCCCCGATAAGGGCAAGTGCACTCGGATCGCAAGGCAACAGTGTCCCGATTGGTCA TGACATGGGAGAGCAGGAGCATGGTGTTAACCCAGATGAGATGATGAATGGGTGGGGAGGCAATGCTCCGAGAGATGAGAAAGAGCCTTCTGAAGATTTC TTGAATGATGAAGAAACTGAAAATGGGAACACAGCAGTACACAGTGAGTGGAGAGAAGTGGGAGAATTTGATCTAAACACTAGATGA
AA sequence Show only first row Show all	>Potri.019G042800.1 pacid=42773550 polypeptide=Potri.019G042800.1.p locus=Potri.019G042800 ID=Potri.019G042800.1.v4.1 annot-version=v4.1 MDHHHHQQQQQQQQQQQQQQLLLQQQQQQVHHQQQQQQQQQHQQQQQFLLLQQLTKQAQQQQQAAAISRFPSNIDAHLRPPSIHRPLTLQQQNPNPNPNS NPNPNPNPNLQQHQQQGSNLGQNAQHSQKPQQQQQPQPQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKGIRPQVNQVEIQMAYQDAWRVC HPDFKRPFGSLEDACERLLPYHVVADYEAEEDDRILDLDTTGQMPSRSQQWDHNIAAKVAEFTGTFEKQALAFNIITRKRSLGEFRSEERLMIEQALLQE EKRLLLNLKAEMDAREKASREAQLRMAAMFQAEQAQAESHAHAEMMSRAPIRASALGSQGNSVPIGHDMGEQEHGVNPDEMMNGWGGNAPRDEKEPSEDF LNDEETENGNTAVHSEWREVGEFDLNTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17510			unknown protein		Potri.019G042800 [exp]	0	1
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	3.87	0.7940
AT5G53060			RNA-binding KH domain-containi...		Potri.015G011100 [exp]	7.21	0.7848
AT5G25060			RNA recognition motif (RRM)-co...		Potri.018G017200 [exp]	8.00	0.7953
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	10.72	0.8014
AT4G37190			unknown protein		Potri.001G361900 [exp]	12.48	0.7398
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.016G079200 [exp]	13.41	0.7826
AT3G20650			mRNA capping enzyme family pro...		Potri.011G130100 [exp]	16.12	0.7461
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.006G212400 [exp]	16.43	0.7347
AT5G41770			crooked neck protein, putative...		Potri.003G137200 [exp]	16.94	0.7666
					Potri.013G062200 [exp]	19.07	0.7123

Compare expression of checked genes

Potri.019G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.