Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64890 488 / 4e-171 Major facilitator superfamily protein (.1) AT1G04570 303 / 1e-97 Major facilitator superfamily protein (.1) AT2G33280 247 / 2e-77 Major facilitator superfamily protein (.1) AT5G54860 191 / 4e-55 Major facilitator superfamily protein (.1) AT2G32040 136 / 8e-35 Major facilitator superfamily protein (.1) AT1G79710 114 / 3e-27 Major facilitator superfamily protein (.1) AT5G25050 112 / 9e-27 Major facilitator superfamily protein (.1) AT5G10820 98 / 8e-22 Major facilitator superfamily protein (.1) AT5G25040 98 / 1e-21 Major facilitator superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G076300 [exp] 712 / 0 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 337 / 1e-110 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.008G173600 [exp] 333 / 3e-109 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 200 / 1e-58 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 195 / 1e-56 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 148 / 5e-39 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 120 / 2e-29 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 119 / 4e-29 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 119 / 5e-29 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024977 [exp] 535 / 0 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1) Lus10024529 [exp] 398 / 6e-137 AT1G64890 355 / 2e-120 Major facilitator superfamily protein (.1) Lus10023708 [exp] 185 / 6e-53 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10006106 [exp] 150 / 2e-39 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 144 / 3e-37 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 133 / 4e-34 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 122 / 3e-30 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 110 / 1e-25 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 108 / 3e-25 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 102 / 2e-23 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF03092 [poplar] [flax] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Potri.019G043000.1 pacid=42773696 polypeptide=Potri.019G043000.1.p locus=Potri.019G043000 ID=Potri.019G043000.1.v4.1 annot-version=v4.1 ATGGTGTCTTCTCCTCCTCCTCCTTATTCATCAGGTAATATGGACCCGAACCCGACAAGGAGAATACTGGGGTTGGGGTTCTGGATACAAGGGCTCAGGT GTTTACCATGGATGGCTATTAACTTCTTTTTGAAAGATGGGCTTCATGTGGACCCTTCTACTCTCCAGCTCCTTCAAAACTCTGCTAATCTTCCCATGGT TGGTAAGCCTCTCTATGGTGTCGTTTCTGATGCTGTTTACATTTCTGGCCAGCACCGCATTCCTTATATTGCCATCGGTGCTTTCTTGCAAGCAGTTTCA TGGCTAGCCATAGCAATCCTCTCTCCATCAGGCATCTCAATCGTCACCTTGAGCCTTTGTCTCCTCCTTAGTAATCTTGGTGCATCAATAGCTGAGGTTG CAAATGATGCCATTGTTGCAGAGATAGGAAAGCAGCCCGCTTTGCCCCCTAAAAACTCCCAGTCATATTCCTCGGGTGAGCTCCAATCATTTGTCTGGAT TGCTTCCTCTGCTGGTGGTGTCCTTGGGAACCTGCTTGGTGGTATTGCCATTAACATTTATGGTCCCCAAGCTATGTTCCTCTTTTTCAGCCTTGCTGTT GCTGTGCAATTGTTTATTATTATAACTGTCCGTGAAAGCTCACTTAACCTCCCCAAAAGTTCATCGAGAGTTGGAATCAGAAAACAGCTTTCAGAGCTCT CAGTTGCATTACAGAAACCTGAGATTGCTTACTCAATAACATGGTTGGCGGCATCAAATGCCATAATTCCATCTCTAACAGGAACCATGTTCTTTTACCA AACACAATATCTGAACATCAATTCATCTGTATTGGGGATCTCTAAGGTTTTTGGCCAGGCAGCAATGCTTCTATGGAGTGTCATCTACAATCGTTTTTTA AAGTCAGTTCCATCGAAGAAATTAATTGCGGCCATTCAGGGAGTGATGGCAGCATTCATGCTGTCTGATGTGCTGTTTGTGAAGGGAGTTTATCGGAGCA TGGGAGTGCCAGATTTGTTATATGTTATAGTCTTCTCAGGCCTTTTGGAGGTTCTATTCTTCTTCAAGATTCTGCCATTCAATATTTTAATAGCACAGCT CTGCCCTTCGGGATGTGAAGGATCCCTGATGGCGCTTGTGGCTTCTGCTACTGCCCTTTCATTCATAGTGAGTGGATACCTTGGAGTTGCACTCTCATCA TTTGTTGGAGTAACTGGCAGTGATTTTTCAGGATTTCCTTGTGCCCTTCTGATACAGGCAGTCTGCACACTCTTGCCGATTTATTGGTCATCTTGCATTC CCGATGATAAGAAGCCGGAAAGCAGGAGCAAAAATGAGTAG
AA sequence Show only first row Show all	>Potri.019G043000.1 pacid=42773696 polypeptide=Potri.019G043000.1.p locus=Potri.019G043000 ID=Potri.019G043000.1.v4.1 annot-version=v4.1 MVSSPPPPYSSGNMDPNPTRRILGLGFWIQGLRCLPWMAINFFLKDGLHVDPSTLQLLQNSANLPMVGKPLYGVVSDAVYISGQHRIPYIAIGAFLQAVS WLAIAILSPSGISIVTLSLCLLLSNLGASIAEVANDAIVAEIGKQPALPPKNSQSYSSGELQSFVWIASSAGGVLGNLLGGIAINIYGPQAMFLFFSLAV AVQLFIIITVRESSLNLPKSSSRVGIRKQLSELSVALQKPEIAYSITWLAASNAIIPSLTGTMFFYQTQYLNINSSVLGISKVFGQAAMLLWSVIYNRFL KSVPSKKLIAAIQGVMAAFMLSDVLFVKGVYRSMGVPDLLYVIVFSGLLEVLFFFKILPFNILIAQLCPSGCEGSLMALVASATALSFIVSGYLGVALSS FVGVTGSDFSGFPCALLIQAVCTLLPIYWSSCIPDDKKPESRSKNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64890			Major facilitator superfamily ...		Potri.019G043000 [exp]	0	1
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.010G048200 [exp]	10.63	0.6644	EIF4.3
AT3G57340			Heat shock protein DnaJ, N-ter...		Potri.006G153700 [exp]	13.56	0.6547
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Potri.015G029300 [exp]	15.29	0.5647
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.008G135980 [exp]	16.24	0.5841
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	19.49	0.6193	EMB78.2
AT3G14080			Small nuclear ribonucleoprotei...		Potri.003G068400 [exp]	29.22	0.6027
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Potri.010G198000 [exp]	72.09	0.5466
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Potri.001G336900 [exp]	74.89	0.5584
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	77.84	0.5069
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Potri.008G161400 [exp]	105.99	0.5484

Compare expression of checked genes

Potri.019G043000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.