Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14770 796 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 323 / 6e-94 PGR3 proton gradient regulation 3 (.1) AT5G55840 319 / 2e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 301 / 3e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 287 / 1e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 283 / 1e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 276 / 6e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12100 273 / 3e-78 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G01110 269 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 264 / 1e-76 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264800 [exp] 360 / 3e-107 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G368700 [exp] 343 / 7e-101 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 333 / 3e-98 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 325 / 1e-95 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 314 / 5e-92 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G249800 [exp] 301 / 3e-88 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G250700 [exp] 301 / 4e-88 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 297 / 6e-88 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 280 / 7e-82 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026206 [exp] 1257 / 0 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037968 [exp] 336 / 2e-98 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 330 / 1e-97 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 327 / 1e-95 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10019524 [exp] 303 / 2e-88 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 290 / 4e-85 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 290 / 2e-83 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 288 / 8e-83 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 277 / 2e-79 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 276 / 2e-79 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.019G043101.4 pacid=42773988 polypeptide=Potri.019G043101.4.p locus=Potri.019G043101 ID=Potri.019G043101.4.v4.1 annot-version=v4.1 ATGATGAACCATCTCAAGTACTATCAAACAAGGGCTTTCCTCTCAAGATCTTTCACTTTCTCATCAACCAAACACCCAAAACCTCTCTCAAAAATCCTTC CTTTTCACCATTTTCACACAAATTCCATCTCACCAACTAAAACCCATCTTTATGCTTCTTTTTTCTGCACTCTTATACACCTTTATTTGACTTGTGGCAG ACTTTCCAAAGCAACTGACACTTTCTATGACATGATAAGAACTCACCATATTGTTCCCACTCTGCCCTTATGGAACCGCCTTATTTACCAGTTCAATGCC ACTGGCTTGGTTTCTCAGGTATGGGACCTTTACTCTGAGATGTTATCTTGTGGGGTTTTGCCTAATGTTTTCACTCATAACATATTGGTACATGCTTGGT GCAAAATGGGTCATTTGAGTTTGGCTTTAGATTTGATTAGAAATGTTGATATTGATGTTGATACTGTAACATATAATACTGCTATTTGGGGGTTTTGTCA ACAAGGTTTGGCTAATCAGGGTTTTGGGTTTTTGTCAATAATGGTAAAGAAAGATACATTCTTTGATTCTTTCACTTGTAATATATTGGTTAAAGGGTTC TGTAGAATTGGGTCGGTTAAGTATGGAGAGTGGGTTATGGATAATTTGGTTAATGGTGGGATTTGTAAGGATGCTGTAGGTTTTAATACATTGATCGATG GATATTGCAAAGTTGGTGAAATAAGTTATGCATTTGAGTTGATGGAAAGAATGAGGAACGAAGGTGTGTTTCCTGATATTGTTACTTATAATACTTTGAT CAATGGGTGCAGCAAAAGAGATGATTTTGACAGAGCCAAGAGTCTGATTGATGAGATTTTGGGGTTTAGGAAGAAAAAAGATTGTGCTTTCAGAAAGATT GATGATATGAACGATGATGATGGTACAACGAATTTGGAACCTAATCTCGTTACATACACCACACTTATAAGTGCTTACTGTAAGCAGCATGGGCTCAGCG AAGCACTTTCTCTGTATGAAGAAATGATTTCGGATGGATTCTTGCCTGATGTTGTTACATATAGTTCCATTATAAATGGTCTTTGCAAACGTGGGATGTT GACAGAAGCAAAGGCACTTTTGAGGGAGATGGACAAGATGGGTGTGAATCCCAATCATGTTGTTTATGCTATTCTAGTTGATTCATTATTTAAAGCAGGG AGTGCTTGGGAATCTTTTATCTATCAAAGTCAAATGATAGTCTGTGGAGTTTCCTTTGATTTGGTAGTGTGCACCACATTGATTGATGGGCTTTTTAAGG CTGGTAAATCTGATGAGGCTGAGGCCATGTTTTGCACACTTGCAAAGCTAAATTGTATTCCAAATAACATTACCTATACAGCAATGATCGATGGATACTG CAAGTTGGGAGACATGGATGGTGCAGAATCTCTGTTGCGAGACATGGAGAAGAAACAGGTTGTTCCAAATGTCGTCACATATTCTTCTATAATAAATGGA TATACAAAGAAAGGAATGCTTGATGTAGCTGTTCGTATTATGAAAAAGATGCTGGACCAAAATATCATGCCAAATGCTTATATATATGCAACATTAATAG ATGGCCATTTGAAGGCTGGTAAACAAGATGCTGCTGTTGATCTCTATAATGAAATGAAATTGAATGGATTGGAGGAAAACAGTTTTATAGTTGATGCCTT CATTAACAACTTGAAAAGGGGCAGAAAGATGGAGGAAGCTGAGGGATTATGTAAATATATGATGTCAAAGGGCTTGTTGCTTGACCGTGTTAACTACACA TCTCTGATGGATGGCTTCTTCAAGACAGGAAGGGAGTCAGCTGCATTCACCATGGCTGAAAAAATGGCAGAGACAGGTATAAAATTTGATGTTGTTGCAT ATAATGTGCTAATTAACGGTCTCTTGAGGCTTGGCAAATATGATGCAGAATCTGTTTATTCTGGAATAAGAGAGTTGGGTTTGGCTCCTGATCGTGCTAC ATATAACACCATGATTAATGCATATTGCAAGCAGGGGAAACTGGAAAATGCCATTAAGCTTTGGAATGAGATGAAGGGTCATTCAGTAATGCCAAATTCA ATTACTTGTAATATTCTGGTAGGAGGGCTTTCTAAAGCTGGTGAGACTGAAAGAGCCATAGATGTGTTGAATGAAATGTTGCTCTGGGGAATTTGCCCTA ACGTAACCATTCATAGAGCTCTACTGAATGCATGCTCAAAATGCGAAAGGGCTGACACAATTTTGCAAATGCATAAGCGACTTGTTGGGATGGGACTTAA AGCCAATCGAGAAGTTTATAACAGCCTTATCACGGTTTTATGTGGGCTAGGCATGACTAAAAGAGCAACTTTAGTATTAAACAACATGACTAAAGAGGGA ATTTCAGCAGATACCGTCACGTATAATGCCCTCATACATGGACATTTTAAAAGCAGTCACATCGAGAAGGCTCTTGCCACATACACTCAGATGTTAAATG AAGGAGTTTCTCCTGGTATCAGAACTTACAATCTCCTTTTGGGTGGTCTCTTAGCAGCAGGTTTGATGAGCAAGGCATATGAAATACTTAGTAAAATGAA GGATAGTGGCCTAGATCCTGATGCTTCTCTATACAATACTCTAATCTCTGGCCATGGTAAGATTGGTAATAAGAAGGAAGCTATAAAATTTTACTGTGAA ATGGTTACTAAAGGCCTTGTTCCCAAGACTAGCACCTATAATGTGCTTATTGAAGATTTTGCCAAGGTAGGAAAGATGGATCAGGCTAGAGAACTTCTGA ATGAGATGCAAGTGAGAAGGGTGCCCCCTAATTCTTCCACTTACGACATACTAATATGTGGCTGGTGCAATTTATCAAAACAACCAGAACTGGATAGGAT ATCAAAGAAGACATACAGGACTGAAGCAAGAACCTTATTTGCAGAGATGAATGAGAAGGGGTTTGTCCCATGTGAAAATACTCTAGCTTGTATCAGCTCT ACCTTTGCTAGACCTGGAATGGTGGTTGATGCTAAGCATATGTTGAAGGACATGTACAAAAGAAAACAAAGTTAG
AA sequence Show only first row Show all	>Potri.019G043101.4 pacid=42773988 polypeptide=Potri.019G043101.4.p locus=Potri.019G043101 ID=Potri.019G043101.4.v4.1 annot-version=v4.1 MMNHLKYYQTRAFLSRSFTFSSTKHPKPLSKILPFHHFHTNSISPTKTHLYASFFCTLIHLYLTCGRLSKATDTFYDMIRTHHIVPTLPLWNRLIYQFNA TGLVSQVWDLYSEMLSCGVLPNVFTHNILVHAWCKMGHLSLALDLIRNVDIDVDTVTYNTAIWGFCQQGLANQGFGFLSIMVKKDTFFDSFTCNILVKGF CRIGSVKYGEWVMDNLVNGGICKDAVGFNTLIDGYCKVGEISYAFELMERMRNEGVFPDIVTYNTLINGCSKRDDFDRAKSLIDEILGFRKKKDCAFRKI DDMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSLFKAG SAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIING YTKKGMLDVAVRIMKKMLDQNIMPNAYIYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYT SLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYDAESVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNS ITCNILVGGLSKAGETERAIDVLNEMLLWGICPNVTIHRALLNACSKCERADTILQMHKRLVGMGLKANREVYNSLITVLCGLGMTKRATLVLNNMTKEG ISADTVTYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEILSKMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCE MVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQVRRVPPNSSTYDILICGWCNLSKQPELDRISKKTYRTEARTLFAEMNEKGFVPCENTLACISS TFARPGMVVDAKHMLKDMYKRKQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14770			Tetratricopeptide repeat (TPR)...		Potri.019G043101 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	1.73	0.9022
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Potri.013G105000 [exp]	3.16	0.8771
AT2G25580			Tetratricopeptide repeat (TPR)...		Potri.014G116600 [exp]	3.74	0.8822
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.010G245000 [exp]	4.24	0.8823
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	7.14	0.8907	Pt-SPY.2
AT5G65560			Pentatricopeptide repeat (PPR)...		Potri.006G124900 [exp]	7.93	0.8776
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Potri.017G012400 [exp]	8.83	0.8525	CHR912
AT4G31430			unknown protein		Potri.018G006200 [exp]	9.05	0.8496
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	9.16	0.8849
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	10.72	0.8833

Compare expression of checked genes

Potri.019G043101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.